(Q39801154)

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In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments.

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Lactobacillus plantarum

object named as

Lactobacillus plantarum

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based on heuristic

inferred from title

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based on heuristic

inferred from title

metabolic pathway

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based on heuristic

inferred from title

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

author name string

Frank H J van Enckevort

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Christof Francke

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Anne Wiersma

4

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Arno Wegkamp

5

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Europe PubMed Central

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8 January 2020

Eddy J Smid

6

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Roland J Siezen

7

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

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1 November 2005

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Europe PubMed Central

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8 January 2020

Applied and Environmental Microbiology

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

71

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

11

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

7253-7262

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

EcoCyc: a comprehensive database resource for Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Riboflavin production in Lactococcus lactis: potential for in situ production of vitamin-enriched foods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Ability of thermophilic lactic acid bacteria to produce aroma compounds from amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

ATP-binding cassette transporters in bacteria

1 reference

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22 September 2017

Integrating high-throughput and computational data elucidates bacterial networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Genome data mining of lactic acid bacteria: the impact of bioinformatics

1 reference

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22 September 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

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22 September 2017

The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533

1 reference

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22 September 2017

Engineering metabolic highways in Lactococci and other lactic acid bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

BRENDA, the enzyme database: updates and major new developments

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

20 August 2018

Biosynthesis of the Thiazole Moiety of Thiamin Pyrophosphate (Vitamin B1)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Increased exopolysaccharide production in Lactococcus lactis due to increased levels of expression of the NIZO B40 eps gene cluster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Review of the BRENDA Database.

1 reference

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22 September 2017

Increased production of folate by metabolic engineering of Lactococcus lactis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Extent of genetic lesions of the arginine and pyrimidine biosynthetic pathways in Lactobacillus plantarum, L. paraplantarum, L. pentosus, and L. casei: prevalence of CO(2)-dependent auxotrophs and characterization of deficient arg genes in L. planta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Missing genes in metabolic pathways: a comparative genomics approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Complete genome sequence of Lactobacillus plantarum WCFS1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Structural biology of enzymes involved in NAD and molybdenum cofactor biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Metabolic network structure determines key aspects of functionality and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Discovering lactic acid bacteria by genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Glutamate dehydrogenase activity: a major criterion for the selection of flavour-producing lactic acid bacteria strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Metabolic engineering of lactic acid bacteria for the production of nutraceuticals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

The Pathway Tools software

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Metabolic engineering of Lactococcus lactis: the impact of genomics and metabolic modelling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

The MetaCyc Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

The EcoCyc Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

The dihydroxyacetone kinase of Escherichia coli utilizes a phosphoprotein instead of ATP as phosphoryl donor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Probiotics in foods not containing milk or milk constituents, with special reference to Lactobacillus plantarum 299v

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Lactococcus lactis as a cell factory for high-level diacetyl production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Thiamin biosynthesis in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Thiamin biosynthesis in Escherichia coli. Identification of ThiS thiocarboxylate as the immediate sulfur donor in the thiazole formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

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22 September 2017

Chorismate mutase and 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase of the methylotrophic actinomycete Amycolatopsis methanolica

1 reference

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22 September 2017

Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Biosynthesis of riboflavin, folic acid, thiamine, and pantothenic acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

22 September 2017

Multiple nutritional requirements of lactobacilli: genetic lesions affecting amino acid biosynthetic pathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

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Methionine biosynthesis in Enterobacteriaceae: biochemical, regulatory, and evolutionary aspects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1287688

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Relation of growth of Streptococcus lactis and Streptococcus cremoris to amino acid transport

1 reference

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Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems.

1 reference

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A nudix enzyme removes pyrophosphate from dihydroneopterin triphosphate in the folate synthesis pathway of bacteria and plants

1 reference

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The biosynthesis of folic acid. XII. Purification and properties of dihydroneopterin triphosphate pyrophosphohydrolase.

1 reference

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Involvement of the molybdenum cofactor biosynthetic machinery in the maturation of the Escherichia coli nitrate reductase A.

1 reference

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1 reference

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20 August 2018

Systematic discovery of analogous enzymes in thiamin biosynthesis

1 reference

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20 August 2018

Lactic acid bacteria as a cell factory: rerouting of carbon metabolism in Lactococcus lactis by metabolic engineering

1 reference

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20 August 2018

Visualization for genomics: the Microbial Genome Viewer

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Lactococcus lactis, a tool for the delivery of therapeutic proteins treatment of IBD

1 reference

https://pubmed.ncbi.nlm.nih.gov/16269766

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.71.11.7253-7262.2005

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16269766%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

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