(Q39845269)

15 September 2017

title

Conservation genomics of natural and managed populations: building a conceptual and practical framework (English)

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15 September 2017

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Iliana Brigitta Baums

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Joanna L. Kelley

object named as

Joanna L Kelley

8

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Gordon Luikart

9

object named as

Gordon Luikart

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15 September 2017

author name string

Laura Marilyn Benestan

1

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15 September 2017

Anne-Laure Ferchaud

2

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15 September 2017

Paul A Hohenlohe

3

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15 September 2017

Brittany A Garner

4

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15 September 2017

Gavin J P Naylor

5

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15 September 2017

Michael K Schwartz

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15 September 2017

language of work or name

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17 April 2016

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15 September 2017

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15 September 2017

volume

25

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15 September 2017

issue

13

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15 September 2017

page(s)

2967-2977

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Fast model-based estimation of ancestry in unrelated individuals

15 September 2017

cites work

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Genomics and the future of conservation genetics

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Exploring linkage disequilibrium.

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Identifying adaptive genetic divergence among populations from genome scans.

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RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

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Landscape genomics in Atlantic salmon (Salmo salar): searching for gene-environment interactions driving local adaptation

21 January 2018

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Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature.

21 January 2018

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A dense linkage map for Chinook salmon (Oncorhynchus tshawytscha) reveals variable chromosomal divergence after an ancestral whole genome duplication event.

21 January 2018

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Population genomics based on low coverage sequencing: how low should we go?

21 January 2018

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BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity.

21 January 2018

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Stacks: an analysis tool set for population genomics

21 January 2018

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BAPS 2: enhanced possibilities for the analysis of genetic population structure.

21 January 2018

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A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

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To pool, or not to pool?

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Genome-wide genetic marker discovery and genotyping using next-generation sequencing

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Special features of RAD Sequencing data: implications for genotyping

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Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

21 January 2018

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

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PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

21 January 2018

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Genome sequencing and population genomics in non-model organisms

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Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

21 January 2018

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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

21 January 2018

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The impact of selection, gene flow and demographic history on heterogeneous genomic divergence: three-spine sticklebacks in divergent environments.

21 January 2018

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A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus)

21 January 2018

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Population genomics from pool sequencing

21 January 2018

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A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

21 January 2018

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Widespread signals of convergent adaptation to high altitude in Asia and america

21 January 2018

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Controlling false discoveries in genome scans for selection

21 January 2018

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Testing for associations between loci and environmental gradients using latent factor mixed models.

21 January 2018

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Harnessing genomics for delineating conservation units.

21 January 2018

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The next generation of molecular markers from massively parallel sequencing of pooled DNA samples

21 January 2018

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Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

21 January 2018

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Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application

21 January 2018

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Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE.

21 January 2018

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Landscape community genomics: understanding eco-evolutionary processes in complex environments

21 January 2018

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Using genomics to characterize evolutionary potential for conservation of wild populations

21 January 2018

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Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species.

21 January 2018

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Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

21 January 2018

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Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

21 January 2018

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The past, present and future of genomic scans for selection.

21 January 2018

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Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

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Targeted capture in evolutionary and ecological genomics.

21 January 2018

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The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure

21 January 2018

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Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome

21 January 2018

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Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure

21 January 2018

1 reference

Estimation of allele frequency and association mapping using next-generation sequencing data

21 January 2018

1 reference

Comparative mapping between Coho Salmon (Oncorhynchus kisutch) and three other salmonids suggests a role for chromosomal rearrangements in the retention of duplicated regions following a whole genome duplication event.

21 January 2018

1 reference

ANGSD: Analysis of Next Generation Sequencing Data.

21 January 2018

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Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction

21 January 2018

1 reference

RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

21 January 2018

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Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha).

21 January 2018

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SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples

21 January 2018

1 reference

Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence in Restio capensis (Restionaceae).

21 January 2018

1 reference

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus).

21 January 2018

1 reference

Signatures of natural selection among lineages and habitats in Oncorhynchus mykiss

21 January 2018

1 reference

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

21 January 2018

1 reference

Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing

21 January 2018

1 reference

Population-genetic inference from pooled-sequencing data

21 January 2018

1 reference

High quality SNP calling using Illumina data at shallow coverage.

21 January 2018

1 reference

Pollux: platform independent error correction of single and mixed genomes

21 January 2018

1 reference

Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference.

21 January 2018

1 reference

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

1 reference

How and why should we implement genomics into conservation?

21 January 2018

1 reference

The effects of inheritance in tetraploids on genetic diversity and population divergence

21 January 2018

1 reference

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

21 January 2018

1 reference

Transcriptomic response to heat stress among ecologically divergent populations of redband trout

21 January 2018

1 reference

Comparison of F(ST) outlier tests for SNP loci under selection.

21 January 2018

1 reference

Genotyping-by-sequencing in ecological and conservation genomics.

21 January 2018

1 reference

Next-generation sequencing data interpretation: enhancing reproducibility and accessibility

21 January 2018

1 reference

Genotype and SNP calling from next-generation sequencing data

21 January 2018

1 reference

Estimation of effective number of breeders from molecular coancestry of single cohort sample

21 January 2018

1 reference

Identification of management units using population genetic data

21 January 2018

1 reference

The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

21 January 2018

1 reference

A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel.

21 January 2018

1 reference

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

21 January 2018

1 reference

Demystifying the RAD fad.

21 January 2018

1 reference

A practical guide to environmental association analysis in landscape genomics.

21 January 2018

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Uninformative polymorphisms bias genome scans for signatures of selection

21 January 2018

1 reference

Genomics and the challenging translation into conservation practice

21 January 2018

1 reference

Sequencing depth and coverage: key considerations in genomic analyses

21 January 2018

1 reference

Adaptation genomics: the next generation

21 January 2018

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Degenerate adaptor sequences for detecting PCR duplicates in reduced representation sequencing data improve genotype calling accuracy

21 January 2018

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Where Next for Genetics and Genomics?

21 January 2018

1 reference

Genome-Wide Association Analysis of Adaptation Using Environmentally Predicted Traits

21 January 2018

1 reference

Genome scan methods against more complex models: when and how much should we trust them?

21 January 2018

1 reference

A new method for estimating effective population sizes from a single sample of multilocus genotypes

21 January 2018

1 reference

Testing for Hardy-Weinberg proportions: have we lost the plot?

21 January 2018

1 reference

What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity

21 January 2018

1 reference

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of F(ST).

21 January 2018

1 reference

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis

21 January 2018

1 reference

Comparing a few SNP calling algorithms using low-coverage sequencing data

21 January 2018

1 reference

Using spatial Bayesian methods to determine the genetic structure of a continuously distributed population: clusters or isolation by distance?

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1111/MEC.13647

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15 September 2017

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