(Q39946990)

15 September 2017

Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers (English)

1 reference

15 September 2017

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10

Tzumin Lee

1 reference

15 September 2017

1

Thomas Brody

1 reference

15 September 2017

Amarendra S. Yavatkar

series ordinal

2

object named as

Amarendra S. Yavatkar

1 reference

15 September 2017

3

Alexander Kuzin

1 reference

15 September 2017

4

Mukta Kundu

1 reference

15 September 2017

5

Leonard J. Tyson

1 reference

15 September 2017

6

Jeffery S Ross

1 reference

15 September 2017

7

Tzu-Yang Lin

1 reference

15 September 2017

8

Cynthia R. Lee

1 reference

15 September 2017

9

Takeshi Awasaki

1 reference

15 September 2017

11

Ward F Odenwald

1 reference

15 September 2017

30 August 2011

1 reference

15 September 2017

21

1 reference

inferred from page(s)

published in

Developmental Dynamics

1 reference

15 September 2017

241

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15 September 2017

1

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15 September 2017

169-189

1 reference

describes a project that uses

15 September 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3243966/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Genome Surveyor 2.0: cis-regulatory analysis in Drosophila

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Signals and combinatorial functions of histone modifications

22 September 2017

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High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation

22 September 2017

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Functional analysis of conserved sequences within a temporally restricted neural precursor cell enhancer

22 September 2017

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Functional and mechanistic diversity of distal transcription enhancers

22 September 2017

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Assessing computational methods of cis-regulatory module prediction

22 September 2017

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Structural basis of Ets1 cooperative binding to palindromic sequences on stromelysin-1 promoter DNA

22 September 2017

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Identification of BMP-responsive elements in the mouse Id2 gene

22 September 2017

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Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny

22 September 2017

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Runx1 binds as a dimeric complex to overlapping Runx1 sites within a palindromic element in the human GM-CSF enhancer

22 September 2017

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Decoding transcription and microRNA-mediated translation control in Drosophila development

22 September 2017

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Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

22 September 2017

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Combinatorial binding predicts spatio-temporal cis-regulatory activity

22 September 2017

1 reference

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Neural stem cell transcriptional networks highlight genes essential for nervous system development

22 September 2017

1 reference

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Organization of developmental enhancers in the Drosophila embryo

22 September 2017

1 reference

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Understanding the regulatory genome.

22 September 2017

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The neural substrate of spectral preference in Drosophila.

22 September 2017

1 reference

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Shadow enhancers as a source of evolutionary novelty

22 September 2017

1 reference

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Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers

22 September 2017

1 reference

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22 September 2017

P-element mutagenesis

1 reference

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Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes

22 September 2017

1 reference

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Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis

22 September 2017

1 reference

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Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data

22 September 2017

1 reference

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Enhancer identification through comparative genomics

22 September 2017

1 reference

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EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Transcriptional control in the segmentation gene network of Drosophila

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

A view from the genome: spatial control of transcription in sea urchin development

22 September 2017

1 reference

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Discrete enhancer elements mediate selective responsiveness of enhancer of split complex genes to common transcriptional activators

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis

22 September 2017

1 reference

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A conserved sequence block in murine and human T cell receptor (TCR) Jalpha region is a composite element that enhances TCR alpha enhancer activity and binds multiple nuclear factors

22 September 2017

1 reference

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Regulation of POU genes by castor and hunchback establishes layered compartments in the Drosophila CNS.

22 September 2017

1 reference

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Homeodomain-DNA recognition

22 September 2017

1 reference

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Imaging neuronal subsets and other cell types in whole-mount Drosophila embryos and larvae using antibody probes.

22 September 2017

1 reference

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The POU domain: versatility in transcriptional regulation by a flexible two-in-one DNA-binding domain.

22 September 2017

1 reference

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Detection in situ of genomic regulatory elements in Drosophila

22 September 2017

1 reference

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A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Regulation of even-skipped stripe 2 in the Drosophila embryo

22 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

22 September 2017

https://api.crossref.org/works/10.1002%2FDVDY.22728

7 January 2021

inferred from DOI database lookup

cis-acting control elements for Krüppel expression in the Drosophila embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Conserved sequence block clustering and flanking inter-cluster flexibility delineate enhancers that regulate nerfin-1 expression during Drosophila CNS development

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Specificity of CNS and PNS regulatory subelements comprising pan-neural enhancers of the deadpan and scratch genes is achieved by repression.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Spacing ensures autonomous expression of different stripe enhancers in the even-skipped promoter.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

castor encodes a novel zinc finger protein required for the development of a subset of CNS neurons in Drosophila

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Competition for overlapping sites in the regulatory region of the Drosophila gene Krüppel.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

ming is expressed in neuroblast sublineages and regulates gene expression in the Drosophila central nervous system

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

The bHLH factor deadpan is a direct target of Notch signaling and regulates neuroblast self-renewal in Drosophila.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Dynamic CRM occupancy reflects a temporal map of developmental progression

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Comparative genomic analysis using the UCSC genome browser

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

REDfly: a Regulatory Element Database for Drosophila.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Lateral inhibition in proneural clusters: cis-regulatory logic and default repression by Suppressor of Hairless

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

New Drosophila transgenic reporters: insulated P-element vectors expressing fast-maturing RFP.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Drosophila NAB (dNAB) is an orphan transcriptional co-repressor required for correct CNS and eye development.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

The Drosophila castor gene is involved in postembryonic brain development

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

drifter, a Drosophila POU-domain transcription factor, is required for correct differentiation and migration of tracheal cells and midline glia.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Suppressor of hairless directly activates transcription of enhancer of split complex genes in response to Notch receptor activity

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

The neurogenic suppressor of hairless DNA-binding protein mediates the transcriptional activation of the enhancer of split complex genes triggered by Notch signaling.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3243966

Gene Regulation: Enhancers Stepping Out of the Shadow

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22174086

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1002/DVDY.22728

1 reference

release_e7ueukvkn5hw7pcniyn4yra2yq

15 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/e7ueukvkn5hw7pcniyn4yra2yq

24 November 2022

mapped directly with Wikidata item

1 reference

15 September 2017

PubMed publication ID

22174086

1 reference