(Q33769725)

29 July 2017

title

Assessing computational methods of cis-regulatory module prediction (English)

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29 July 2017

2

1 reference

29 July 2017

Jing Su

1

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29 July 2017

Thomas A Down

series ordinal

3

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29 July 2017

publication date

2 December 2010

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PLOS Computational Biology

29 July 2017

published in

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29 July 2017

volume

6

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29 July 2017

issue

12

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29 July 2017

page(s)

e1001020

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Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

2 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Compositional differences within and between eukaryotic genomes

28 July 2018

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28 July 2018

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Multiple regulatory elements in the intergenic region between the alpha-fetoprotein and albumin genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996316

Regulatory elements in the first intron contribute to transcriptional regulation of the beta 3 tubulin gene by 20-hydroxyecdysone in Drosophila Kc cells

28 July 2018

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Chromosomal subunits in active genes have an altered conformation

28 July 2018

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Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.

28 July 2018

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Searching for statistically significant regulatory modules.

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A probabilistic method to detect regulatory modules.

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MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules

21 January 2018

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Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.

21 January 2018

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REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila

21 January 2018

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Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

21 January 2018

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Using hexamers to predict cis-regulatory motifs in Drosophila.

21 January 2018

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Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm

21 January 2018

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ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?

21 January 2018

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Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors

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DiRE: identifying distant regulatory elements of co-expressed genes

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Identification and characterization of a conserved erythroid-specific enhancer located in intron 8 of the human 5-aminolevulinate synthase 2 gene

21 January 2018

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Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

21 January 2018

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PReMod: a database of genome-wide mammalian cis-regulatory module predictions

21 January 2018

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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

21 January 2018

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Human and mouse gene structure: comparative analysis and application to exon prediction

21 January 2018

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Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

21 January 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

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Unlocking the secrets of the genome

21 January 2018

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Predicting expression patterns from regulatory sequence in Drosophila segmentation.

21 January 2018

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Expected rates and modes of evolution of enhancer sequences

21 January 2018

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Rapid evolution of cis-regulatory sequences via local point mutations

21 January 2018

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Automatic annotation of genomic regulatory sequences by searching for composite clusters.

21 January 2018

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10.1371/JOURNAL.PCBI.1001020

30 October 2018

Identifiers

DOI

1 reference

29 July 2017

DBLP publication ID

journals/ploscb/SuTD10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

29 July 2017

1 reference