(Q39977512)

16 September 2017

The anisotropic network model web server at 2015 (ANM 2.0). (English)

1 reference

16 September 2017

1 reference

3

Ivet Bahar

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author name string

Eran Eyal

series ordinal

1

1 reference

16 September 2017

Gengkon Lum

series ordinal

2

1 reference

16 September 2017

language of work or name

English

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publication date

6 January 2015

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16 September 2017

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16 September 2017

31

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16 September 2017

9

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16 September 2017

1487-1489

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Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network model

16 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Substrate recognition and motion mode analyses of PFV integrase in complex with viral DNA via coarse-grained models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

NMSim web server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Instantaneous normal modes as an unforced reaction coordinate for protein conformational transitions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Global dynamics of proteins: bridging between structure and function

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Raster3D: photorealistic molecular graphics

22 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

22 September 2017

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU847

Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

iGNM: a database of protein functional motions based on Gaussian Network Model.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

WEBnm@: a web application for normal mode analyses of proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Anisotropy of fluctuation dynamics of proteins with an elastic network model

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Consistent improvement of cross-docking results using binding site ensembles generated with elastic network normal modes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

oGNM: online computation of structural dynamics using the Gaussian Network Model

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Conformational change of proteins arising from normal mode calculations

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Hamiltonian replica exchange combined with elastic network analysis to enhance global domain motions in atomistic molecular dynamics simulations.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Efficient inclusion of receptor flexibility in grid-based protein-ligand docking.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Anisotropic network model: systematic evaluation and a new web interface.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Global ribosome motions revealed with elastic network model

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Analysis of domain motions by approximate normal mode calculations.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410662

Ligand-induced conformational change of a protein reproduced by a linear combination of displacement vectors obtained from normal mode analysis

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25568280

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTU847

1 reference

journals/bioinformatics/EyalLB15

16 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 September 2017

PubMed publication ID

25568280

1 reference