(Q40251298)

18 September 2017

Thermodynamics of alpha- and beta-structure formation in proteins (English)

1 reference

18 September 2017

1

Anders Irbäck

1 reference

18 September 2017

Björn Samuelsson

2

1 reference

18 September 2017

Fredrik Sjunnesson

series ordinal

3

1 reference

18 September 2017

Stefan Wallin

series ordinal

4

1 reference

18 September 2017

language of work or name

English

0 references

publication date

1 September 2003

1 reference

18 September 2017

8

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

18 September 2017

85

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18 September 2017

3

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18 September 2017

1466-1473

1 reference

The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

A structure-based method for derivation of all-atom potentials for protein folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

The free energy landscape for beta hairpin folding in explicit water

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Three-helix-bundle protein in a Ramachandran model

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Physical reasons for the unusual alpha-helix stabilization afforded by charged or neutral polar residues in alanine-rich peptides

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

A molecular dynamics study of the 41-56 beta-hairpin from B1 domain of protein G

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Understanding beta-hairpin formation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

The packing density in proteins: standard radii and volumes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

The calorimetric criterion for a two-state process revisited

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Folding dynamics and mechanism of beta-hairpin formation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Absence of a stable intermediate on the folding pathway of protein A.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Laser temperature jump study of the helix<==>coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Fast events in protein folding: helix melting and formation in a small peptide.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Electrostatic screening of charge and dipole interactions with the helix backbone

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Calorimetric determination of the enthalpy change for the alpha-helix to coil transition of an alanine peptide in water

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

The Protein Data Bank: a computer-based archival file for macromolecular structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Hydrogen bonds, hydrophobicity forces and the character of the collapse transition

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Noninteracting local‐structure model of folding and unfolding transition in globular proteins. I. Formulation

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Internal stark effect measurement of the electric field at the amino terminus of an alpha helix

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

4 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303323

Modeling protein density of states: additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

2 December 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

New Monte Carlo technique for studying phase transitions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Exploring the energy landscape of a beta hairpin in explicit solvent

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Polymer principles of protein calorimetric two-state cooperativity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Role of side-chains in the cooperative beta-hairpin folding of the short C-terminal fragment derived from streptococcal protein G

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Simulated Tempering: A New Monte Carlo Scheme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Equation of State Calculations by Fast Computing Machines

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Beta-hairpin folding simulations in atomistic detail using an implicit solvent model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974579-2

10.1016/S0006-3495(03)74579-2

7 January 2021

Identifiers

DOI

1 reference

18 September 2017

1 reference

1 reference

18 September 2017

PubMed publication ID

12944264

1 reference