(Q40307214)

English

Checking the pH-induced conformational transition of prion protein by molecular dynamics simulations: effect of protonation of histidine residues

scientific article published on 17 September 2004

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

Checking the pH-induced conformational transition of prion protein by molecular dynamics simulations: effect of protonation of histidine residues (English)

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

prion protein family

0 references

object named as

Emma Langella

1

0 references

Vincenzo Barone

3

object named as

Vincenzo Barone

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

author name string

Roberto Improta

2

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

language of work or name

0 references

publication date

17 September 2004

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Europe PubMed Central

PMC publication ID

19 September 2017

number of pages

10

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based on heuristic

inferred from page(s)

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

87

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

6

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

3623-3632

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

describes a project that uses

molecular dynamics simulation

1 reference

based on heuristic

inferred from title

From conversion to aggregation: protofibril formation of the prion protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Molecular dynamics simulation of dimeric and monomeric forms of human prion protein: insight into dynamics and properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Stability and Cu(II) binding of prion protein variants related to inherited human prion diseases

1 reference

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22 September 2017

Exploring the propensities of helices in PrP(C) to form beta sheet using NMR structures and sequence alignments

1 reference

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22 September 2017

Computational studies on prion proteins: effect of Ala(117)-->Val mutation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Crystal structure of the human prion protein reveals a mechanism for oligomerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Biosynthesis and cellular processing of the prion protein.

1 reference

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22 September 2017

Location and properties of metal-binding sites on the human prion protein.

1 reference

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22 September 2017

Electron paramagnetic resonance evidence for binding of Cu(2+) to the C-terminal domain of the murine prion protein

1 reference

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22 September 2017

Mapping the early steps in the pH-induced conformational conversion of the prion protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

The prion protein globular domain and disease-related mutants studied by molecular dynamics simulations.

1 reference

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22 September 2017

NMR structure of the bovine prion protein

1 reference

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22 September 2017

Molecular dynamics of mouse and Syrian hamster PrP: implications for activity

1 reference

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22 September 2017

NMR solution structure of the human prion protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Molecular dynamics simulations of human prion protein: importance of correct treatment of electrostatic interactions

1 reference

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22 September 2017

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

1 reference

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22 September 2017

Copper stimulates endocytosis of the prion protein

1 reference

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22 September 2017

A scrapie-like unfolding intermediate of the prion protein domain PrP(121-231) induced by acidic pH.

1 reference

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22 September 2017

Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data.

1 reference

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22 September 2017

The environmental dependency of protein folding best explains prion and amyloid diseases

1 reference

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22 September 2017

Structure of the recombinant full-length hamster prion protein PrP(29-231): the N terminus is highly flexible

1 reference

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22 September 2017

Recombinant scrapie-like prion protein of 106 amino acids is soluble

1 reference

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22 September 2017

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1 reference

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22 September 2017

Measurement of endosome pH following folate receptor-mediated endocytosis.

1 reference

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22 September 2017

NMR structure of the mouse prion protein domain PrP(121-231)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Thermal stability and conformational transitions of scrapie amyloid (prion) protein correlate with infectivity

1 reference

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22 September 2017

Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Cholesterol depletion and modification of COOH-terminal targeting sequence of the prion protein inhibit formation of the scrapie isoform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

22 September 2017

Glycolipid-anchored proteins in neuroblastoma cells form detergent-resistant complexes without caveolin

1 reference

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22 September 2017

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

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22 September 2017

Self-replication and scrapie

1 reference

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22 September 2017

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1 reference

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22 September 2017

Molecular biology of prion diseases

1 reference

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22 September 2017

Prion diseases and neurodegeneration

1 reference

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The Ninth Datta Lecture. Molecular biology of transmissible spongiform encephalopathies

1 reference

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25 September 2017

Copper coordination in the full-length, recombinant prion protein

1 reference

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1 reference

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17 June 2018

Secondary structure analysis of the scrapie-associated protein PrP 27-30 in water by infrared spectroscopy

1 reference

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Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin

1 reference

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17 June 2018

Helix H1 of the prion protein is rather stable against environmental perturbations: molecular dynamics of mutation and deletion variants of PrP(90-231).

1 reference

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20 August 2018

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1 reference

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20 August 2018

Simulations of biomolecules: Characterization of the early steps in the pH-induced conformational conversion of the hamster, bovine and human forms of the prion protein

1 reference

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20 August 2018

Structural features of prions explored by sequence analysis. II. A PrP(Sc) model

1 reference

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1 reference

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1 reference

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20 August 2018

Prediction of amyloid fibril-forming proteins.

1 reference

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20 August 2018

Novel PRNP sequence variant associated with familial encephalopathy

1 reference

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20 August 2018

Pathologic conformations of prion proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

20 August 2018

Reversible peptide folding in solution by molecular dynamics simulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

20 August 2018

Prion protein selectively binds copper(II) ions

1 reference

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20 August 2018

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1 reference

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1 reference

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Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing.

1 reference

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Copper binding to the N-terminal tandem repeat regions of mammalian and avian prion protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304876

20 August 2018

Scrapie prions aggregate to form amyloid-like birefringent rods

1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/15377536

12 December 2020

based on heuristic

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Sensitivity of scrapie infectivity to detergents and 2-mercaptoethanol

1 reference

https://pubmed.ncbi.nlm.nih.gov/15377536

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1 reference

https://pubmed.ncbi.nlm.nih.gov/15377536

12 December 2020

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3 Nsec molecular dynamics simulation of the protein ubiquitin and comparison with X-ray crystal and solution NMR structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/15377536

12 December 2020

based on heuristic

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pH-dependent stability and conformation of the recombinant human prion protein PrP(90-231)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15377536

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The importance of the disulfide bond in prion protein conversion

1 reference

https://pubmed.ncbi.nlm.nih.gov/15377536

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based on heuristic

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Folding-unfolding thermodynamics of a beta-heptapeptide from equilibrium simulations

1 reference

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12 December 2020

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Identifiers

10.1529/BIOPHYSJ.104.043448

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 September 2017

ResearchGate publication ID

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