(Q40973379)

English

Inference of the Arabidopsis lateral root gene regulatory network suggests a bifurcation mechanism that defines primordia flanking and central zones

scientific article published on 5 May 2015

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scholarly article

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Europe PubMed Central

PubMed publication ID

25 September 2017

Inference of the Arabidopsis lateral root gene regulatory network suggests a bifurcation mechanism that defines primordia flanking and central zones (English)

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Europe PubMed Central

PubMed publication ID

25 September 2017

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Kristine Hill

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Michael H Wilson

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Laurent Laplaze

object named as

Laurent Laplaze

13

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Malcolm Bennett

object named as

Malcolm J Bennett

14

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Soazig Guyomarc'h

object named as

Soazig Guyomarc'h

3

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Hidehiro Fukaki

12

object named as

Hidehiro Fukaki

1 reference

Europe PubMed Central

PubMed publication ID

25 September 2017

1

object named as

Julien Lavenus

1 reference

Europe PubMed Central

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25 September 2017

2

object named as

Tatsuaki Goh

1 reference

Europe PubMed Central

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25 September 2017

author name string

Mikael Lucas

5

1 reference

Europe PubMed Central

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25 September 2017

Ute Voß

6

1 reference

Europe PubMed Central

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25 September 2017

Kim Kenobi

7

1 reference

Europe PubMed Central

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25 September 2017

Etienne Farcot

9

1 reference

Europe PubMed Central

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25 September 2017

Gretchen Hagen

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25 September 2017

Thomas J Guilfoyle

11

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Europe PubMed Central

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25 September 2017

publication date

5 May 2015

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Europe PubMed Central

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25 September 2017

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Europe PubMed Central

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25 September 2017

27

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Europe PubMed Central

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25 September 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

25 September 2017

1368-1388

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Europe PubMed Central

PubMed publication ID

25 September 2017

copyright license

Creative Commons Attribution 4.0 International

20 January 2021

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April 2022 Public Data File from Crossref

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0 references

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Review on statistical methods for gene network reconstruction using expression data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Cell surface ABP1-TMK auxin-sensing complex activates ROP GTPase signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks

1 reference

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14 September 2018

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

To branch or not to branch: the role of pre-patterning in lateral root formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

MYB56 encoding a R2R3 MYB transcription factor regulates seed size in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Lateral root development in Arabidopsis: fifty shades of auxin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Phyllotaxis and rhizotaxis in Arabidopsis are modified by three PLETHORA transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Auxin-associated initiation of vascular cell differentiation by LONESOME HIGHWAY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

ABP1 and ROP6 GTPase signaling regulate clathrin-mediated endocytosis in Arabidopsis roots.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

A ROP GTPase-dependent auxin signaling pathway regulates the subcellular distribution of PIN2 in Arabidopsis roots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Early development and gravitropic response of lateral roots in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Auxin triggers a genetic switch.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Multimodular auxin response controls lateral root development in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Cytoscape 2.8: new features for data integration and network visualization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The roots of a new green revolution.

1 reference

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14 September 2018

Oscillating gene expression determines competence for periodic Arabidopsis root branching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Advantages and limitations of current network inference methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Revealing strengths and weaknesses of methods for gene network inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

LBD18/ASL20 regulates lateral root formation in combination with LBD16/ASL18 downstream of ARF7 and ARF19 in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

AINTEGUMENTA and AINTEGUMENTA-LIKE6 act redundantly to regulate Arabidopsis floral growth and patterning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Root system architecture from coupling cell shape to auxin transport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Mechanical induction of lateral root initiation in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

BABY BOOM target genes provide diverse entry points into cell proliferation and cell growth pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Root branching responses to phosphate and nitrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Integration of biological networks and gene expression data using Cytoscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Auxin fluxes in the root apex co-regulate gravitropism and lateral root initiation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The auxin-regulated AP2/EREBP gene PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Network motifs: theory and experimental approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

GAL4-GFP enhancer trap lines for genetic manipulation of lateral root development in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Intrinsic and environmental response pathways that regulate root system architecture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

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BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The Arabidopsis F-box protein TIR1 is an auxin receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The F-box protein TIR1 is an auxin receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

A Bayesian approach to reconstructing genetic regulatory networks with hidden factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Just-in-time transcription program in metabolic pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Local, efflux-dependent auxin gradients as a common module for plant organ formation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Structure and function of the feed-forward loop network motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Organization and cell differentiation in lateral roots of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

14 September 2018

Auxin regulates aquaporin function to facilitate lateral root emergence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4456640

2 December 2018

ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/25944102

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression profiling of auxin-treated Arabidopsis roots: toward a molecular analysis of lateral root emergence

1 reference

https://pubmed.ncbi.nlm.nih.gov/25944102

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PICKLE is required for SOLITARY-ROOT/IAA14-mediated repression of ARF7 and ARF19 activity during Arabidopsis lateral root initiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/25944102

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin techniques for plant cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/25944102

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/25944102

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.114.132993

1 reference

Europe PubMed Central

PubMed publication ID

25 September 2017

10.1105/TPC.114.132993

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Dimensions Publication ID

0 references

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 September 2017

ResearchGate publication ID

0 references

2-s2.0-84930699518

0 references

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