(Q41741269)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

Development of a virus detection and discovery pipeline using next generation sequencing (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

2

Ioannis E Tzanetakis

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

language of work or name

English

0 references

publication date

22 October 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

volume

471-473

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

page(s)

54-60

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25461531%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

24 February 2020

massive parallel sequencing

1 reference

based on heuristic

inferred from title

cites work

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Galaxy: a web-based genome analysis tool for experimentalists

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VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue

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PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results

7 January 2021

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PathSeq: software to identify or discover microbes by deep sequencing of human tissue

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Fast gapped-read alignment with Bowtie 2

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ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution

7 January 2021

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CDD: specific functional annotation with the Conserved Domain Database

7 January 2021

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Current impact and future directions of high throughput sequencing in plant virus diagnostics.

7 January 2021

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READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation

7 January 2021

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Detection of Cereal yellow dwarf virus using small interfering RNAs and enhanced infection rate with Cocksfoot streak virus in wild cocksfoot grass (Dactylis glomerata).

7 January 2021

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Epidemiology of Blackberry yellow vein associated virus

7 January 2021

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Genetic characterization of Blueberry necrotic ring blotch virus, a novel RNA virus with unique genetic features

7 January 2021

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Complete sequence and genetic characterization of Raspberry latent virus, a novel member of the family Reoviridae

7 January 2021

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Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

7 January 2021

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Association of a DNA virus with grapevines affected by red blotch disease in California

7 January 2021

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Complete genome sequence of a novel vitivirus isolated from grapevine

7 January 2021

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

7 January 2021

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Molecular characterization and population structure of blackberry vein banding associated virus, new Ampelovirus associated with yellow vein disease

7 January 2021

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A Member of the Closteroviridae from Mint with Similarities to All Three Genera of the Family

7 January 2021

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Complete nucleotide sequence of a virus associated with rusty mottle disease of sweet cherry (Prunus avium).

7 January 2021

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Viruses associated with rusty mottle and twisted leaf diseases of sweet cherry are distinct species

7 January 2021

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Identification of a new enamovirus associated with citrus vein enation disease by deep sequencing of small RNAs

7 January 2021

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Sequence recombination and conservation of Varroa destructor virus-1 and deformed wing virus in field collected honey bees (Apis mellifera)

7 January 2021

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VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data

7 January 2021

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VIROME: a standard operating procedure for analysis of viral metagenome sequences.

7 January 2021

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 January 2021

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