(Q41778410)

English

The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase

scientific article published on 25 June 2010

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scholarly article

1 reference

Europe PubMed Central

9 October 2017

The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase (English)

1 reference

Europe PubMed Central

9 October 2017

4

object named as

Robert Landick

1 reference

Europe PubMed Central

9 October 2017

author name string

Kook Sun Ha

1

1 reference

Europe PubMed Central

9 October 2017

Innokenti Toulokhonov

2

1 reference

Europe PubMed Central

9 October 2017

Dmitry G Vassylyev

3

1 reference

Europe PubMed Central

9 October 2017

language of work or name

0 references

publication date

25 June 2010

1 reference

Europe PubMed Central

9 October 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

9 October 2017

401

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Europe PubMed Central

9 October 2017

5

1 reference

Europe PubMed Central

9 October 2017

708-725

1 reference

Europe PubMed Central

9 October 2017

The transcription elongation factor NusA is required for stress-induced mutagenesis in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Elongation by RNA polymerase: a race through roadblocks

1 reference

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6 June 2018

Molecular evolution of multisubunit RNA polymerases: sequence analysis

1 reference

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6 June 2018

The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Mapping protein-protein interactions by localized oxidation: consequences of the reach of hydroxyl radical

1 reference

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6 June 2018

Regulator trafficking on bacterial transcription units in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Applied force reveals mechanistic and energetic details of transcription termination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Single-molecule tracking of mRNA exiting from RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

A transcription antiterminator constructs a NusA-dependent shield to the emerging transcript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Structural basis for transcription elongation by bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Direct versus limited-step reconstitution reveals key features of an RNA hairpin-stabilized paused transcription complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Structure of a Mycobacterium tuberculosis NusA-RNA complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

The E. coli NusA carboxy-terminal domains are structurally similar and show specific RNAP- and lambdaN interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Bacterial transcription elongation factors: new insights into molecular mechanism of action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Crystal Structure of NusA from Thermotoga Maritima and Functional Implication of the N-Terminal Domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism invitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Crystal structure of the transcription elongation/anti-termination factor NusA from Mycobacterium tuberculosis at 1.7 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

An extended RNA binding surface through arrayed S1 and KH domains in transcription factor NusA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

The alpha subunit of E. coli RNA polymerase activates RNA binding by NusA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Direct localization of a beta-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Targeted protein footprinting: where different transcription factors bind to RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Novel RNA-binding motif: the KH module

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Assembly of the N-dependent antitermination complex of phage lambda: NusA and RNA bind independently to different unfolded domains of the N protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Localization of nusA-suppressing amino acid substitutions in the conserved regions of the beta' subunit of Escherichia coli RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Ribosomal RNA antitermination in vitro: requirement for Nus factors and one or more unidentified cellular components.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

A protein-RNA interaction network facilitates the template-independent cooperative assembly on RNA polymerase of a stable antitermination complex containing the lambda N protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Sequence elements essential for rho-dependent transcription termination at lambda tR1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Phage lambda gene Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

NusA protein is necessary and sufficient in vitro for phage lambda N gene product to suppress a rho-independent terminator placed downstream of nutL.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

lambda N antitermination system: functional analysis of phage interactions with the host NusA protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

The Salmonella typhimurium his operon leader region contains an RNA hairpin-dependent transcription pause site. Mechanistic implications of the effect on pausing of altered RNA hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Use of T7 RNA polymerase to direct expression of cloned genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

A quantitative assessment for transcriptional pausing of DNA-dependent RNA polymerases in vitro.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

The NusA and NusG proteins of Escherichia coli increase the in vitro readthrough frequency of a transcriptional attenuator preceding the gene for the beta subunit of RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

6 June 2018

NusA modulates intragenic termination by different pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

18 August 2018

An integrated model of the transcription complex in elongation, termination, and editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

18 August 2018

Synthesis of the protein cutting reagent iron (S)-1-(p-bromoacetamidobenzyl)ethylenediaminetetraacetate and conjugation to cysteine side chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

18 August 2018

The KH domain occurs in a diverse set of RNA-binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

18 August 2018

nusA protein of Escherichia coli is an efficient transcription termination factor for certain terminator sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

18 August 2018

An elongation control particle containing the N gene transcriptional antitermination protein of bacteriophage lambda.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

18 August 2018

Control of intrinsic transcription termination by N and NusA: the basic mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3682478

3 November 2018

Nuclease cleavage of the upstream half of the nontemplate strand DNA in an Escherichia coli transcription elongation complex causes upstream translocation and transcriptional arrest.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional importance of regions in Escherichia coli elongation factor NusA that interact with RNA polymerase, the bacteriophage lambda N protein and RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence that the KH RNA-binding domains influence the action of the E. coli NusA protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The downstream DNA jaw of bacterial RNA polymerase facilitates both transcriptional initiation and pausing

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nus mutations affect transcription termination in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Termination of transcription by nusA gene protein of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nusA gene protein of Escherichia coli. Its identification and a demonstration that it interacts with the gene N transcription anti-termination protein of bacteriophage lambda

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A complementary DNA oligomer releases a transcription pause complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA polymerase pausing and transcript release at the lambda tR1 terminator in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription antitermination in vitro by lambda N gene product: requirement for a phage nut site and the products of host nusA, nusB, and nusE genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stability of an RNA secondary structure affects in vitro transcription pausing in the trp operon leader region

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of rho factor to Escherichia coli RNA polymerase mediated by nusA protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nus A protein affects transcriptional pausing and termination in vitro by binding to different sites on the transcription complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of Escherichia coli Nus A protein on transcription termination in vitro are not increased or decreased by DNA sequences sufficient for antitermination in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies of the functional topography of Escherichia coli RNA polymerase. A method for localization of the sites of affinity labelling

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing

1 reference

https://pubmed.ncbi.nlm.nih.gov/20600118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2010.06.036

1 reference

Europe PubMed Central

9 October 2017

1 reference

Europe PubMed Central

9 October 2017

1 reference

Europe PubMed Central

9 October 2017

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