(Q41820741)

English

Enhanced gene detection assays for fumarate-adding enzymes allow uncovering of anaerobic hydrocarbon degraders in terrestrial and marine systems

scientific article published on 2 November 2012

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Enhanced gene detection assays for fumarate-adding enzymes allow uncovering of anaerobic hydrocarbon degraders in terrestrial and marine systems (English)

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Sara Kleindienst

3

0 references

Tillmann Lueders

7

0 references

5

object named as

Katrin Knittel

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

author name string

Frederick von Netzer

1

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Giovanni Pilloni

2

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Sara Kleindienst

3

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Martin Krüger

4

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Friederike Gründger

6

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Tillmann Lueders

7

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

language of work or name

0 references

publication date

2 November 2012

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Applied and Environmental Microbiology

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

79

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

2

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

543-552

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

1 reference

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6 June 2018

Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes

1 reference

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6 June 2018

Retrieval of glycoside hydrolase family 9 cellulase genes from environmental DNA by metagenomic gene specific multi-primer PCR.

1 reference

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6 June 2018

Combined application of PCR-based functional assays for the detection of aromatic-compound-degrading anaerobes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Anaerobic degradation of non-substituted aromatic hydrocarbons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Genome sequence of the deltaproteobacterial strain NaphS2 and analysis of differential gene expression during anaerobic growth on naphthalene

1 reference

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6 June 2018

Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers

1 reference

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6 June 2018

Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

A strictly anaerobic betaproteobacterium Georgfuchsia toluolica gen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor

1 reference

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6 June 2018

Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons

1 reference

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6 June 2018

T-REX: software for the processing and analysis of T-RFLP data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Anaerobic degradation of naphthalene and 2-methylnaphthalene by strains of marine sulfate-reducing bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Desulfotignum toluenicum sp. nov., a novel toluene-degrading, sulphate-reducing bacterium isolated from an oil-reservoir model column

1 reference

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6 June 2018

Dominance of Geobacteraceae in BTX-degrading enrichments from an iron-reducing aquifer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Adding handles to unhandy substrates: anaerobic hydrocarbon activation mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

The use of multiplex PCR to detect and differentiate food- and beverage-associated microorganisms: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Microbiological investigation of methane- and hydrocarbon-discharging mud volcanoes in the Carpathian Mountains, Romania

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Desulfatibacillum alkenivorans sp. nov., a novel n-alkene-degrading, sulfate-reducing bacterium, and emended description of the genus Desulfatibacillum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Desulfatibacillum aliphaticivorans gen. nov., sp. nov., an n-alkane- and n-alkene-degrading, sulfate-reducing bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Benzylsuccinate synthase of Azoarcus sp. strain T: cloning, sequencing, transcriptional organization, and its role in anaerobic toluene and m-xylene mineralization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Anaerobic degradation of 2-methylnaphthalene by a sulfate-reducing enrichment culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

DNA recovery from soils of diverse composition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

6 June 2018

Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals

1 reference

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6 June 2018

Identification of naphthalene carboxylase as a prototype for the anaerobic activation of non-substituted aromatic hydrocarbons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

Molecular diversity and distribution of aromatic hydrocarbon-degrading anaerobes across a landfill leachate plume

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron-reducing enrichment culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

Diversity of benzyl- and alkylsuccinate synthase genes in hydrocarbon-impacted environments and enrichment cultures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

Assessing the correlation between anaerobic toluene degradation activity and bssA concentrations in hydrocarbon-contaminated aquifer material

1 reference

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18 August 2018

Anaerobic alkane-degrading strain AK-01 contains two alkylsuccinate synthase genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation

1 reference

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18 August 2018

Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1.

1 reference

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18 August 2018

Anaerobic oxidation of short-chain hydrocarbons by marine sulphate-reducing bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553772

18 August 2018

Identification and expression of benzylsuccinate synthase genes in a toluene-degrading methanogenic consortium

1 reference

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18 August 2018

Evaluation of inhibition and cross-reaction effects on real-time PCR applied to the total DNA of wastewater samples for the quantification of bacterial antibiotic resistance genes and taxon-specific targets

1 reference

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18 August 2018

Methylation is the initial reaction in anaerobic naphthalene degradation by a sulfate-reducing enrichment culture

1 reference

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18 August 2018

Degradation of o-xylene and m-xylene by a novel sulfate-reducer belonging to the genus Desulfotomaculum

1 reference

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18 August 2018

Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients

1 reference

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18 August 2018

A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene

1 reference

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18 August 2018

Extraction and purification of microbial DNA from petroleum‐contaminated soils and detection of low numbers of toluene, octane and pesticide degraders by multiplex polymerase chain reaction and Southern analysis

1 reference

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18 August 2018

Metabolites Indicate Hot Spots of Biodegradation and Biogeochemical Gradients in a High-Resolution Monitoring Well

1 reference

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2 December 2018

Co-metabolic conversion of toluene in anaerobic n-alkane-degrading bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/23124238

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dual biomarkers of anaerobic hydrocarbon degradation in historically contaminated groundwater

1 reference

https://pubmed.ncbi.nlm.nih.gov/23124238

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of anaerobic xylene biodegradation by two-dimensional isotope fractionation analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23124238

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.02362-12

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

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