(Q41880961)

13 October 2017

RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins (English)

1 reference

13 October 2017

1 reference

Quaid Morris

2

0 references

author name string

Hilal Kazan

series ordinal

1

1 reference

PMC publication ID

3692078

13 October 2017

language of work or name

1 reference

10 June 2013

1 reference

13 October 2017

Nucleic Acids Research

1 reference

13 October 2017

41

1 reference

13 October 2017

Web Server issue

1 reference

13 October 2017

W180-6

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

13 October 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Global or local? Predicting secondary structure and accessibility in mRNAs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Genome-wide identification of polycomb-associated RNAs by RIP-seq

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

RBPDB: a database of RNA-binding specificities

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Quantifying similarity between motifs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

MEME: discovering and analyzing DNA and protein sequence motifs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

CMfinder--a covariance model based RNA motif finding algorithm

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

CLIP: a method for identifying protein-RNA interaction sites in living cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

enoLOGOS: a versatile web tool for energy normalized sequence logos

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

A statistical sampling algorithm for RNA secondary structure prediction

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

RNA sequence analysis using covariance models

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

The meaning and use of the area under a receiver operating characteristic (ROC) curve

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

Local RNA base pairing probabilities in large sequences.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692078

18 August 2018

Identifiers

DOI

10.1093/NAR/GKT463

1 reference

13 October 2017

journals/nar/KazanM13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

3692078

13 October 2017

PubMed publication ID

23754853

1 reference

PMC publication ID

3692078