(Q41986072)

14 October 2017

Realistic three dimensional fitness landscapes generated by self organizing maps for the analysis of experimental HIV-1 evolution (English)

1 reference

14 October 2017

1 reference

3

1 reference

14 October 2017

Ramón Lorenzo-Redondo

object named as

Ramón Lorenzo-Redondo

series ordinal

1

0 references

Cecilio Lopez-Galindez

object named as

Cecilio Lopez-Galindez

series ordinal

4

0 references

author name string

Soledad Delgado

series ordinal

2

1 reference

14 October 2017

language of work or name

English

0 references

publication date

28 February 2014

1 reference

14 October 2017

1 reference

14 October 2017

9

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14 October 2017

2

1 reference

14 October 2017

e88579

1 reference

Creative Commons Attribution 4.0 International

14 October 2017

start time

28 February 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Exploring the complexity of the HIV-1 fitness landscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Predictability of evolutionary trajectories in fitness landscapes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

The phenotype-fitness map in experimental evolution of phages

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Quasispecies spatial models for RNA viruses with different replication modes and infection strategies

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Exploring the fitness landscape of an RNA virus by using a universal barcode microarray

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Dynamics of in vitro fitness recovery of HIV-1.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Rapid construction of empirical RNA fitness landscapes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Initial fitness recovery of HIV-1 is associated with quasispecies heterogeneity and can occur without modifications in the consensus sequence

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Fitness epistasis and constraints on adaptation in a human immunodeficiency virus type 1 protein region

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Viral dynamics and in vivo fitness of HIV-1 in the presence and absence of enfuvirtide

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Empirical fitness landscapes reveal accessible evolutionary paths

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

EVOLUTION IN MENDELIAN POPULATIONS

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Fitness landscape of human immunodeficiency virus type 1 protease quasispecies

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Virus fitness: concept, quantification, and application to HIV population dynamics.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Few mutations in the 5' leader region mediate fitness recovery of debilitated human immunodeficiency type 1 viruses

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Evolution of digital organisms at high mutation rates leads to survival of the flattest

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Evolvability of an RNA virus is determined by its mutational neighbourhood

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Smoothness within ruggedness: the role of neutrality in adaptation.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Dilute passage promotes expression of genetic and phenotypic variants of human immunodeficiency virus type 1 in cell culture.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Natural Selection and the Concept of a Protein Space

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Selforganization of matter and the evolution of biological macromolecules

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

A computer model of evolutionary optimization

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Stationary mutant distributions and evolutionary optimization

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Dynamics of small autocatalytic reaction networks--I. Bifurcations, permanence and exclusion

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

SOMCD: method for evaluating protein secondary structure from UV circular dichroism spectra.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

From sequences to shapes and back: a case study in RNA secondary structures.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938428

A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase

18 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088579

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24586344

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Continuity in evolution: on the nature of transitions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24586344

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Physical aspects of evolutionary optimization and adaptation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24586344

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0088579

1 reference

14 October 2017

0 references

1 reference

14 October 2017

PubMed publication ID

24586344

1 reference