(Q42026897)

English

Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus.

scientific article published on 27 May 2011

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scholarly article

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Europe PubMed Central

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2 February 2020

Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21622960%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

tick-borne encephalitis

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tick-borne encephalitis virus

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tick-borne encephalitis virus

1 reference

based on heuristic

inferred from title

1

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2 February 2020

2

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2 February 2020

4

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2 February 2020

Ernest A. Gould

5

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E A Gould

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2 February 2020

Tamara S. Gritsun

6

object named as

T S Gritsun

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2 February 2020

author name string

A Buckley

3

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2 February 2020

publication date

27 May 2011

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2 February 2020

Nucleic Acids Research

1 reference

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2 February 2020

39

1 reference

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2 February 2020

16

1 reference

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2 February 2020

7034-7048

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21622960%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

A balance between circular and linear forms of the dengue virus genome is crucial for viral replication

1 reference

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1 reference

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Non-Hemagglutinating Flaviviruses: Molecular Mechanisms for the Emergence of New Strains via Adaptation to European Ticks

1 reference

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5 June 2018

Tick-borne encephalitis in Europe and beyond--the epidemiological situation as of 2007

1 reference

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5 June 2018

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1 reference

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5 June 2018

Origin and evolution of 3'UTR of flaviviruses: long direct repeats as a basis for the formation of secondary structures and their significance for virus transmission

1 reference

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5 June 2018

Genetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomy

1 reference

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Genetic characterization of a new insect flavivirus isolated from Culex pipiens mosquito in Japan

1 reference

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5 June 2018

Direct repeats in the 3' untranslated regions of mosquito-borne flaviviruses: possible implications for virus transmission.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Secondary structure of dengue virus type 4 3' untranslated region: impact of deletion and substitution mutations

1 reference

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5 June 2018

A 5' RNA element promotes dengue virus RNA synthesis on a circular genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

The 3' untranslated region of tick-borne flaviviruses originated by the duplication of long repeat sequences within the open reading frame

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Functional analysis of the tick-borne encephalitis virus cyclization elements indicates major differences between mosquito-borne and tick-borne flaviviruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

DINAMelt web server for nucleic acid melting prediction

1 reference

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5 June 2018

Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Structure and function of the 3' terminal six nucleotides of the west nile virus genome in viral replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Conserved RNA secondary structures in Flaviviridae genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Tick-borne flaviviruses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Origins, evolution, and vector/host coadaptations within the genus Flavivirus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Mfold web server for nucleic acid folding and hybridization prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Genetic and phenotypic characterization of the newly described insect flavivirus, Kamiti River virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

A stable full-length yellow fever virus cDNA clone and the role of conserved RNA elements in flavivirus replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Fine Mapping of a cis-Acting Sequence Element in Yellow Fever Virus RNA That Is Required for RNA Replication and Cyclization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Spontaneous mutations restore the viability of tick-borne encephalitis virus mutants with large deletions in protein C.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Capsid protein C of tick-borne encephalitis virus tolerates large internal deletions and is a favorable target for attenuation of virulence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Biochemical and genetic studies of the initiation of human rhinovirus 2 RNA replication: identification of a cis-replicating element in the coding sequence of 2A(pro).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Poliovirus RNA replication requires genome circularization through a protein-protein bridge

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Essential role of cyclization sequences in flavivirus RNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Genetic and biochemical studies of poliovirus cis-acting replication element cre in relation to VPg uridylylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Identification of a cis-acting replication element within the poliovirus coding region

1 reference

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5 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Switch from translation to RNA replication in a positive-stranded RNA virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Spontaneous and engineered deletions in the 3' noncoding region of tick-borne encephalitis virus: construction of highly attenuated mutants of a flavivirus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Dengue type 4 virus mutants containing deletions in the 3' noncoding region of the RNA genome: analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Importance of localized skin infection in tick-borne encephalitis virus transmission.

1 reference

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5 June 2018

Capsid coding sequence is required for efficient replication of human rhinovirus 14 RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Infectious transcripts of tick-borne encephalitis virus, generated in days by RT-PCR.

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Growth-restricted dengue virus mutants containing deletions in the 5' noncoding region of the RNA genome

1 reference

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Characterization of a murine coronavirus defective interfering RNA internal cis-acting replication signal.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303483

5 June 2018

Conserved elements in the 3' untranslated region of flavivirus RNAs and potential cyclization sequences

1 reference

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Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

1 reference

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The complete nucleotide sequence of cell fusing agent (CFA): homology between the nonstructural proteins encoded by CFA and the nonstructural proteins encoded by arthropod-borne flaviviruses

1 reference

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5 June 2018

RNA tetraloop folding reveals tension between backbone restraints and molecular interactions

1 reference

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RNA-dependent RNA polymerase of hepatitis C virus binds to its coding region RNA stem-loop structure, 5BSL3.2, and its negative strand

1 reference

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Origin and evolution of flavivirus 5'UTRs and panhandles: trans-terminal duplications?

1 reference

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17 August 2018

Direct repeats in the flavivirus 3' untranslated region; a strategy for survival in the environment?

1 reference

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1 reference

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1 reference

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1 reference

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17 August 2018

The degree of attenuation of tick-borne encephalitis virus depends on the cumulative effects of point mutations

1 reference

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1 reference

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1 reference

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1 reference

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17 August 2018

Tick-borne encephalitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622960

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A branched stem-loop structure in the M-site of bacteriophage Qbeta RNA is important for template recognition by Qbeta replicase holoenzyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/21622960

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKR237

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21622960%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21622960%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21622960%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

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