(Q42035600)

English

Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities

scientific article published on August 2005

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities (English)

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Bradyrhizobium japonicum

1 reference

based on heuristic

inferred from title

Mesorhizobium loti

object named as

Mesorhizobium loti

1 reference

based on heuristic

inferred from title

Jiří Damborský

8

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Kiwamu Minamisawa

6

object named as

Kiwamu Minamisawa

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

author name string

Yukari Sato

1

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Marta Monincová

2

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Radka Chaloupková

3

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Zbynek Prokop

4

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Yoshiyuki Ohtsubo

5

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Masataka Tsuda

7

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Yuji Nagata

9

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

language of work or name

0 references

publication date

1 August 2005

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Europe PubMed Central

PMC publication ID

15 October 2017

Applied and Environmental Microbiology

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Europe PubMed Central

PMC publication ID

15 October 2017

71

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

8

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

4372-4379

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

The PredictProtein server.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Pattern and sources of naturally produced organohalogens in the marine environment: biogenic formation of organohalogens

1 reference

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5 June 2018

Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Complete Genomic Sequence of Nitrogen-fixing Symbiotic Bacterium Bradyrhizobium japonicum USDA110

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Cloning and expression of the haloalkane dehalogenase gene dhmA from Mycobacterium avium N85 and preliminary characterization of DhmA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Biodegradation of 1,2,3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene

1 reference

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5 June 2018

The natural chlorine cycle--fitting the scattered pieces

1 reference

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5 June 2018

Generating segmental mutations in haloalkane dehalogenase: a novel part in the directed evolution toolbox

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Structure-specificity relationships for haloalkane dehalogenases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Complete Genome Structure of the Nitrogen-fixing Symbiotic Bacterium Mesorhizobium loti

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Overexpression of trigger factor prevents aggregation of recombinant proteins in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

NPS@: network protein sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Haloalkane dehalogenases: structure of a Rhodococcus enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Analysis of the reaction mechanism and substrate specificity of haloalkane dehalogenases by sequential and structural comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Protein secondary structure prediction based on position-specific scoring matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 refined at 1.15 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

JPred: a consensus secondary structure prediction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Prediction of protein secondary structure using the 3D-1D compatibility algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Strategies for achieving high-level expression of genes in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Bacterial dehalogenases: biochemistry, genetics, and biotechnological applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Genetics and biochemistry of dehalogenating enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

R Factor Transfer in Rhizobium leguminosarum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Transmissible resistance to penicillin G, neomycin, and chloramphenicol in Rhizobium japonicum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

The alpha/beta hydrolase fold

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

5 June 2018

Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

17 August 2018

Catalytic mechanism of the maloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

17 August 2018

Steady-state and pre-steady-state kinetic analysis of halopropane conversion by a rhodococcus haloalkane dehalogenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

17 August 2018

Biochemical characterization of broad-specificity enzymes using multivariate experimental design and a colorimetric microplate assay: characterization of the haloalkane dehalogenase mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

17 August 2018

Kinetics of halide release of haloalkane dehalogenase: evidence for a slow conformational change.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

17 August 2018

A thioredoxin gene fusion expression system that circumvents inclusion body formation in the E. coli cytoplasm.

1 reference

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17 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1183339

17 August 2018

Construction and Characterization of Histidine-Tagged Haloalkane Dehalogenase (LinB) of a New Substrate Class from a γ-Hexachlorocyclohexane-Degrading Bacterium, Sphingomonas paucimobilis UT26

1 reference

https://pubmed.ncbi.nlm.nih.gov/16085827

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of protein secondary structure from circular dichroism spectra: inclusion of denatured proteins with native proteins in the analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16085827

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti (supplement)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16085827

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 (supplement)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16085827

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.71.8.4372-4379.2005

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

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