(Q42124731)

16 October 2017

HHsenser: exhaustive transitive profile search using HMM-HMM comparison (English)

1 reference

16 October 2017

1

1 reference

16 October 2017

4

Andrei N Lupas

1 reference

16 October 2017

Michael Remmert

2

1 reference

PMC publication ID

1538784

16 October 2017

Andreas Biegert

series ordinal

3

1 reference

16 October 2017

1 July 2006

1 reference

16 October 2017

Nucleic Acids Research

1 reference

16 October 2017

34

1 reference

16 October 2017

Web Server issue

1 reference

16 October 2017

W374-8

1 reference

HHrep: de novo protein repeat detection and the origin of TIM barrels

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

The HHpred interactive server for protein homology detection and structure prediction

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

PROFcon: novel prediction of long-range contacts.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

The P5 protein from bacteriophage phi-6 is a distant homolog of lytic transglycosylases

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Protein homology detection by HMM-HMM comparison

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

CLANS: a Java application for visualizing protein families based on pairwise similarity

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

The Jalview Java alignment editor

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Better prediction of sub-cellular localization by combining evolutionary and structural information.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Fold recognition without folds

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Intermediate sequences increase the detection of homology between sequences

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

An evolutionary trace method defines binding surfaces common to protein families

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Hidden Markov models in computational biology. Applications to protein modeling

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

In silico identification of functional regions in proteins.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

An evolution based classifier for prediction of protein interfaces without using protein structures.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Using evolutionary information for the query and target improves fold recognition.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Evaluation of structural and evolutionary contributions to deleterious mutation prediction.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Analysis and prediction of functional sub-types from protein sequence alignments.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538784

Alignments grow, secondary structure prediction improves

17 August 2018

1 reference

12 December 2020

Sequence clustering strategies improve remote homology recognitions while reducing search times

1 reference

12 December 2020

Automatic methods for predicting functionally important residues

1 reference

12 December 2020

Optimizing long intrinsic disorder predictors with protein evolutionary information

1 reference

12 December 2020

Assessment of a rigorous transitive profile based search method to detect remotely similar proteins

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL195

1 reference

16 October 2017

journals/nar/SodingRBL06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

1538784

16 October 2017

PubMed publication ID

16845029

1 reference

PMC publication ID

1538784