(Q42133852)

English

Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. II. Interplay of local backbone conformational dynamics and long-range hydrophobic interactions in hairpin formation

scientific article published on August 2009

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Europe PubMed Central

PMC publication ID

17 October 2017

Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. II. Interplay of local backbone conformational dynamics and long-range hydrophobic interactions in hairpin formation (English)

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Europe PubMed Central

PMC publication ID

17 October 2017

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Harold A. Scheraga

5

object named as

Harold A Scheraga

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Europe PubMed Central

PMC publication ID

17 October 2017

4

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Adam Liwo

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Europe PubMed Central

PMC publication ID

17 October 2017

Stanislaw Oldziej

3

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Stanisław Ołdziej

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Europe PubMed Central

PMC publication ID

17 October 2017

author name string

Agnieszka Skwierawska

1

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Europe PubMed Central

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17 October 2017

Wioletta Zmudzińska

2

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Europe PubMed Central

PMC publication ID

17 October 2017

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publication date

1 August 2009

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Europe PubMed Central

PMC publication ID

17 October 2017

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Europe PubMed Central

PMC publication ID

17 October 2017

76

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Europe PubMed Central

PMC publication ID

17 October 2017

3

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

637-654

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

The program XEASY for computer-supported NMR spectral analysis of biological macromolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791350

29 May 2018

Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. I. Importance of hydrophobic interactions in stabilization of beta-hairpin structure

1 reference

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29 May 2018

Conformational studies of the C-terminal 16-amino-acid-residue fragment of the B3 domain of the immunoglobulin binding protein G from Streptococcus

1 reference

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29 May 2018

NMR study and molecular dynamics simulations of optimized beta-hairpin fragments of protein G.

1 reference

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29 May 2018

The role of hydrophobic interactions in initiation and propagation of protein folding

1 reference

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Folding and aggregation kinetics of a beta-hairpin

1 reference

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DETERMINATION OF THE PARAMETERS FOR HELIX FORMATION IN POLY-gamma-BENZYL-L-GLUTAMATE.

1 reference

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Some factors in the interpretation of protein denaturation

1 reference

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Length-dependent stability and strand length limits in antiparallel -sheet secondary structure

1 reference

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1 reference

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1 reference

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1 reference

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Structural characterization of a mutant peptide derived from ubiquitin: Implications for protein folding

1 reference

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Protein folding mechanisms: new methods and emerging ideas

1 reference

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The turn sequence directs beta-strand alignment in designed beta-hairpins

1 reference

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Protein folding: from the levinthal paradox to structure prediction

1 reference

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29 May 2018

Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding

1 reference

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Is protein folding hierarchic? II. Folding intermediates and transition states

1 reference

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Is protein folding hierarchic? I. Local structure and peptide folding

1 reference

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29 May 2018

Theory of hydrophobic interactions

1 reference

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Torsion angle dynamics for NMR structure calculation with the new program DYANA

1 reference

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29 May 2018

Folding dynamics and mechanism of beta-hairpin formation

1 reference

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Methods to estimate the conformation of proteins and polypeptides from circular dichroism data

1 reference

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MOLMOL: a program for display and analysis of macromolecular structures

1 reference

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Structures of bacterial immunoglobulin-binding domains and their complexes with immunoglobulins

1 reference

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29 May 2018

Dissecting the structure of a partially folded protein. Circular dichroism and nuclear magnetic resonance studies of peptides from ubiquitin

1 reference

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Protein folding dynamics: the diffusion-collision model and experimental data

1 reference

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29 May 2018

The third IgG-binding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab

1 reference

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A revised set of potentials for beta-turn formation in proteins

1 reference

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Structural analysis of peptides encompassing all alpha-helices of three alpha/beta parallel proteins: Che-Y, flavodoxin and P21-ras: implications for alpha-helix stability and the folding of alpha/beta parallel proteins

1 reference

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A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

1 reference

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A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native β-hairpin

1 reference

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A salt bridge stabilizes the helix formed by isolated C-peptide of RNase A

1 reference

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Amino acid side-chain partition energies and distribution of residues in soluble proteins

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1H-NMR assignment and folding of the isolated ribonuclease 21-42 fragment

1 reference

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Conformation of peptide fragments of proteins in aqueous solution: implications for initiation of protein folding

1 reference

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Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering

1 reference

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Dominant forces in protein folding

1 reference

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Intermediates in the folding reactions of small proteins

1 reference

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1 reference

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1 reference

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Thermodynamic analysis of the folding of the streptococcal protein G IgG-binding domains B1 and B2: why small proteins tend to have high denaturation temperatures

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1 reference

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1 reference

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1 reference

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1 reference

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Interplay between hydrophobic cluster and loop propensity in beta-hairpin formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19241469

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19241469

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1 reference

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1 reference

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Helix-coil transition of the isolated amino terminus of ribonuclease

1 reference

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1 reference

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1 reference

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1 reference

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based on heuristic

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1 reference

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Identifiers

10.1002/PROT.22377

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

ResearchGate publication ID

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