(Q42152878)

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The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion.

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26 January 2020

The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion (English)

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26 January 2020

Saccharomyces cerevisiae

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based on heuristic

inferred from title

4

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26 January 2020

Miranda M. Darby

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26 January 2020

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Leo Serebreni

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26 January 2020

Xuewen Pan

3

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26 January 2020

Jeffry L Corden

5

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26 January 2020

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19 March 2012

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26 January 2020

Molecular and Cellular Biology

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26 January 2020

32

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26 January 2020

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26 January 2020

1762-1775

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26 January 2020

Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1.

1 reference

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29 May 2018

A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria

1 reference

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29 May 2018

Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing

1 reference

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29 May 2018

Dual role of mitofilin in mitochondrial membrane organization and protein biogenesis

1 reference

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29 May 2018

Lateral release of proteins from the TOM complex into the outer membrane of mitochondria

1 reference

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29 May 2018

Discovery of a small molecule targeting IRA2 deletion in budding yeast and neurofibromin loss in malignant peripheral nerve sheath tumor cells

1 reference

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29 May 2018

Unravelling the means to an end: RNA polymerase II transcription termination.

1 reference

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29 May 2018

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

1 reference

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29 May 2018

Mpk1 MAPK association with the Paf1 complex blocks Sen1-mediated premature transcription termination.

1 reference

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29 May 2018

Stress-specific composition, assembly and kinetics of stress granules in Saccharomyces cerevisiae

1 reference

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29 May 2018

Nuclear mRNA quality control in yeast is mediated by Nrd1 co-transcriptional recruitment, as revealed by the targeting of Rho-induced aberrant transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Gene-specific RNA polymerase II phosphorylation and the CTD code

1 reference

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29 May 2018

Uniform transitions of the general RNA polymerase II transcription complex

1 reference

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29 May 2018

Connecting mutations of the RNA polymerase II C-terminal domain to complex phenotypic changes using combined gene expression and network analyses

1 reference

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29 May 2018

Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae

1 reference

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29 May 2018

Eukaryotic stress granules: the ins and outs of translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Progression through the RNA polymerase II CTD cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis

1 reference

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29 May 2018

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Bidirectional promoters generate pervasive transcription in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Analyzing P-bodies in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

An increase in mitochondrial DNA promotes nuclear DNA replication in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Identification of genes that function in the biogenesis and localization of small nucleolar RNAs in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

How Saccharomyces responds to nutrients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

High-level production of beta-carotene in Saccharomyces cerevisiae by successive transformation with carotenogenic genes from Xanthophyllomyces dendrorhous

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Metabolic regulation of IMD2 transcription and an unusual DNA element that generates short transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

dSLAM analysis of genome-wide genetic interactions in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

RNA-quality control by the exosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

A screen for nigericin-resistant yeast mutants revealed genes controlling mitochondrial volume and mitochondrial cation homeostasis.

1 reference

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29 May 2018

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Transcriptional interference--a crash course

1 reference

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29 May 2018

Mdm31 and Mdm32 are inner membrane proteins required for maintenance of mitochondrial shape and stability of mitochondrial DNA nucleoids in yeast

1 reference

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29 May 2018

Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein

1 reference

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29 May 2018

Genomic analysis of stationary-phase and exit in Saccharomyces cerevisiae: gene expression and identification of novel essential genes.

1 reference

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29 May 2018

Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

The Ras/PKA signaling pathway may control RNA polymerase II elongation via the Spt4p/Spt5p complex in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Nucleolar clustering of dispersed tRNA genes.

1 reference

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29 May 2018

Global analysis of protein localization in budding yeast

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29 May 2018

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

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29 May 2018

Box C/D small nucleolar RNA trafficking involves small nucleolar RNP proteins, nucleolar factors and a novel nuclear domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

A yeast heterogeneous nuclear ribonucleoprotein complex associated with RNA polymerase II

1 reference

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29 May 2018

The E-box DNA binding protein Sgc1p suppresses the gcr2 mutation, which is involved in transcriptional activation of glycolytic genes in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

The economics of ribosome biosynthesis in yeast

1 reference

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29 May 2018

Signalling between mitochondria and the nucleus regulates the expression of a new D-lactate dehydrogenase activity in yeast

1 reference

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29 May 2018

Transcriptional regulation of CLN3 expression by glucose in Saccharomyces cerevisiae.

1 reference

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29 May 2018

Regulation of the Cln3-Cdc28 kinase by cAMP in Saccharomyces cerevisiae.

1 reference

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29 May 2018

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

1 reference

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29 May 2018

Exploring the metabolic and genetic control of gene expression on a genomic scale

1 reference

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29 May 2018

Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family

1 reference

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29 May 2018

Repression of gene expression by an exogenous sequence element acting in concert with a heterogeneous nuclear ribonucleoprotein-like protein, Nrd1, and the putative helicase Sen1

1 reference

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29 May 2018

DAF1, a mutant gene affecting size control, pheromone arrest, and cell cycle kinetics of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

Cloning and characterization of the high-affinity cAMP phosphodiesterase of Saccharomyces cerevisiae

1 reference

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29 May 2018

The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog

1 reference

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29 May 2018

Cloning and characterization of the low-affinity cyclic AMP phosphodiesterase gene of Saccharomyces cerevisiae

1 reference

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29 May 2018

Cell size modulation by CDC25 and RAS2 genes in Saccharomyces cerevisiae.

1 reference

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29 May 2018

IRA1, an inhibitory regulator of the RAS-cyclic AMP pathway in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

29 May 2018

S. cerevisiae genes IRA1 and IRA2 encode proteins that may be functionally equivalent to mammalian ras GTPase activating protein.

1 reference

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29 May 2018

Glucose regulates transcription in yeast through a network of signaling pathways

1 reference

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17 August 2018

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae

1 reference

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17 August 2018

Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

17 August 2018

Inactivation of cleavage factor I components Rna14p and Rna15p induces sequestration of small nucleolar ribonucleoproteins at discrete sites in the nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

17 August 2018

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.

1 reference

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17 August 2018

Identification of target genes of a yeast transcriptional repressor.

1 reference

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17 August 2018

The C-terminal domain of the largest subunit of RNA polymerase II is required for stationary phase entry and functionally interacts with the Ras/PKA signaling pathway.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

17 August 2018

Inhibition of G1 cyclin activity by the Ras/cAMP pathway in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3347421

17 August 2018

Dosage suppressors of the dominant G1 cyclin mutant CLN3-2: identification of a yeast gene encoding a putative RNA/ssDNA binding protein

1 reference

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17 August 2018

A Robust Toolkit for Functional Profiling of the Yeast Genome

1 reference

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1 December 2018

Nuclear RNA surveillance: no sign of substrates tailing off

1 reference

https://pubmed.ncbi.nlm.nih.gov/22431520

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analyzing P-bodies and stress granules in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/22431520

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Repression of growth-regulated Gl cyclin expression by cyclic AMP in budding yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/22431520

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of yeast NRD1 expression by premature transcription termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/22431520

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Growth-related changes in phosphorylation of yeast RNA polymerase II

1 reference

https://pubmed.ncbi.nlm.nih.gov/22431520

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

1 reference

https://pubmed.ncbi.nlm.nih.gov/22431520

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MCB.00050-12

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22431520%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22431520%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22431520%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

ResearchGate publication ID

0 references

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