(Q27938771)

Nrd1 complex RNA-binding subunit YNL251C

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

Tyler J Creamer

1

0 references

Miranda M. Darby

object named as

Miranda M Darby

2

0 references

Haiping Hao

object named as

Haiping Hao

5

0 references

author name string

Nuttara Jamonnak

3

0 references

Paul Schaughency

4

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Sarah J Wheelan

6

0 references

Jeffry L Corden

Creative Commons Attribution 4.0 International

7

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language of work or name

English

0 references

publication date

October 2011

0 references

1 reference

1 December 2016

7

0 references

issue

10

0 references

page(s)

e1002329

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copyright license

start time

20 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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20 March 2017

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Nuclear mRNA quality control in yeast is mediated by Nrd1 co-transcriptional recruitment, as revealed by the targeting of Rho-induced aberrant transcripts

20 March 2017

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Uniform transitions of the general RNA polymerase II transcription complex

20 March 2017

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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

20 March 2017

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The Ess1 prolyl isomerase is required for transcription termination of small noncoding RNAs via the Nrd1 pathway

20 March 2017

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

20 March 2017

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Single-RNA counting reveals alternative modes of gene expression in yeast

20 March 2017

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Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

20 March 2017

1 reference

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The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

20 March 2017

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

20 March 2017

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Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination

20 March 2017

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Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae.

20 March 2017

1 reference

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Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

20 March 2017

1 reference

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Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

20 March 2017

1 reference

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cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II

20 March 2017

1 reference

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Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

20 March 2017

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

20 March 2017

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Exploration of essential gene functions via titratable promoter alleles

20 March 2017

1 reference

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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

20 March 2017

1 reference

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20 March 2017

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Multiple protein/protein and protein/RNA interactions suggest roles for yeast DNA/RNA helicase Sen1p in transcription, transcription-coupled DNA repair and RNA processing

20 March 2017

1 reference

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Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends

20 March 2017

1 reference

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Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination

20 March 2017

1 reference

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20 March 2017

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RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Genomic expression programs in the response of yeast cells to environmental changes

20 March 2017

1 reference

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A yeast heterogeneous nuclear ribonucleoprotein complex associated with RNA polymerase II

20 March 2017

1 reference

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Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs

20 March 2017

1 reference

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Functions of the exosome in rRNA, snoRNA and snRNA synthesis

20 March 2017

1 reference

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

20 March 2017

1 reference

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

RNA-quality control by the exosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Progression through the RNA polymerase II CTD cycle

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Bidirectional promoters generate pervasive transcription in yeast

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Yeast Sen1 helicase protects the genome from transcription-associated instability.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

MochiView: versatile software for genome browsing and DNA motif analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

An integrated software system for analyzing ChIP-chip and ChIP-seq data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

A role for noncoding transcription in activation of the yeast PHO5 gene

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Distinct pathways for snoRNA and mRNA termination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

SEN1, a positive effector of tRNA-splicing endonuclease in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Gene-specific RNA polymerase II phosphorylation and the CTD code

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Metabolic regulation of IMD2 transcription and an unusual DNA element that generates short transcripts

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Antisense transcription controls cell fate in Saccharomyces cerevisiae

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation.

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002329

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002329

A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linking

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002329

Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197677

Regulation of yeast NRD1 expression by premature transcription termination

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22028667

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22028667

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Terminating transcription in yeast: whether to be a 'nerd' or a 'rat'

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22028667

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1002329

1 reference

896276

896276

1 reference

1 reference

1 reference