(Q42219045)

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Full-length structural model of RET3 and SEC21 in COPI: identification of binding sites on the appendage for accessory protein recruitment motifs

scientific article published on 14 January 2012

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Full-length structural model of RET3 and SEC21 in COPI: identification of binding sites on the appendage for accessory protein recruitment motifs (English)

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Isabelle Rouiller

object named as

Isabelle Rouiller

2

0 references

author name string

Laleh Alisaraie

1

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

publication date

14 January 2012

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Journal of Molecular Modeling

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

18

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

7

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

3199-3212

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Structure of Coatomer Cage Proteins and the Relationship among COPI, COPII, and Clathrin Vesicle Coats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

The Pfam protein families database

1 reference

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26 October 2017

Tickets to ride: selecting cargo for clathrin-regulated internalization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Protein structure prediction on the Web: a case study using the Phyre server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Solution structure of human zeta-COP: direct evidences for structural similarity between COP I and clathrin-adaptor coats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

A structural explanation for the binding of endocytic dileucine motifs by the AP2 complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Protein structure homology modeling using SWISS-MODEL workspace.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Structural basis for cargo regulation of COPII coat assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Conformational changes of coat proteins during vesicle formation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Life of a clathrin coat: insights from clathrin and AP structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Structure of the Sec13/31 COPII coat cage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Molecular model for a complete clathrin lattice from electron cryomicroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Crystal structure of the clathrin adaptor protein 1 core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Adaptable adaptors for coated vesicles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Gamma-COP appendage domain - structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Conserved structural motifs in intracellular trafficking pathways: structure of the gammaCOP appendage domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Multiple sequence alignment with the Clustal series of programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Gamma-adaptin appendage domain: structure and binding site for Eps15 and gamma-synergin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Molecular architecture and functional model of the endocytic AP2 complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Accessory protein recruitment motifs in clathrin-mediated endocytosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Pcons: a neural-network-based consensus predictor that improves fold recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Similar subunit interactions contribute to assembly of clathrin adaptor complexes and COPI complex: analysis using yeast three-hybrid system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

The structure and function of the beta 2-adaptin appendage domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

COP I domains required for coatomer integrity, and novel interactions with ARF and ARF-GAP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

The PSIPRED protein structure prediction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Enhanced genome annotation using structural profiles in the program 3D-PSSM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Tandem arrangement of the clathrin and AP-2 binding domains in amphiphysin 1 and disruption of clathrin coat function by amphiphysin fragments comprising these sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Peptide-in-groove interactions link target proteins to the beta-propeller of clathrin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Crystal structure of the alpha appendage of AP-2 reveals a recruitment platform for clathrin-coat assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

A structural explanation for the binding of multiple ligands by the alpha-adaptin appendage domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Association of the AP-3 adaptor complex with clathrin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Sorting out adaptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

In vitro assembly and disassembly of coatomer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Verification of protein structures: patterns of nonbonded atomic interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

zeta-COP, a subunit of coatomer, is required for COP-coated vesicle assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Deep-etch visualization of proteins involved in clathrin assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

26 October 2017

Detection of multiscale pockets on protein surfaces using mathematical morphology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

17 August 2018

Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

17 August 2018

ZDOCK: an initial-stage protein-docking algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

17 August 2018

Lasker Basic Medical Research Award. The machinery and principles of vesicle transport in the cell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3385859

17 August 2018

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1324-9

21 January 2018

GROMACS: A message-passing parallel molecular dynamics implementation

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1324-9

21 January 2018

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1324-9

21 January 2018

γ-Adaptin Appendage Domain

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1324-9

21 January 2018

Molecular dynamics with coupling to an external bath

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1324-9

21 January 2018

How to don a coat

1 reference

https://api.crossref.org/works/10.1007%2FS00894-011-1324-9

21 January 2018

Hydration thermodynamic properties of amino acid analogues: a systematic comparison of biomolecular force fields and water models

1 reference

https://pubmed.ncbi.nlm.nih.gov/22246286

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis of components of the eukaryotic vesicle transport system reveals a common origin of adaptor protein complexes 1, 2, and 3 and the F subcomplex of the coatomer COPI

1 reference

https://pubmed.ncbi.nlm.nih.gov/22246286

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00894-011-1324-9

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

ResearchGate publication ID

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