(Q42674366)

English

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

scientific article published on 21 July 2017

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scholarly article

1 reference

Europe PubMed Central

4 November 2017

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation (English)

1 reference

Europe PubMed Central

4 November 2017

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Anders F Andersson

13

1 reference

Europe PubMed Central

4 November 2017

Henrik Aspeborg

object named as

Henrik Aspeborg

12

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Nicolas Terrapon

object named as

Nicolas Terrapon

3

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object named as

Jonas Malmsten

6

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object named as

Paul Wilmes

10

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Bernard Henrissat

11

object named as

Bernard Henrissat

1 reference

Europe PubMed Central

4 November 2017

Vincent Lombard

4

object named as

Vincent Lombard

1 reference

Europe PubMed Central

4 November 2017

9

object named as

Pranjul Shah

1 reference

Europe PubMed Central

4 November 2017

author name string

Olov Svartström

1

1 reference

Europe PubMed Central

4 November 2017

Johannes Alneberg

2

1 reference

Europe PubMed Central

4 November 2017

Ino de Bruijn

5

1 reference

Europe PubMed Central

4 November 2017

Ann-Marie Dalin

7

1 reference

Europe PubMed Central

4 November 2017

Emilie El Muller

8

1 reference

Europe PubMed Central

4 November 2017

publication date

21 July 2017

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Europe PubMed Central

4 November 2017

The ISME Journal

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Europe PubMed Central

4 November 2017

11

1 reference

Europe PubMed Central

4 November 2017

11

1 reference

Europe PubMed Central

4 November 2017

2538-2551

1 reference

Europe PubMed Central

4 November 2017

https://scigraph.springernature.com/pub.10.1038/ismej.2017.108

0 references

High-throughput DNA sequencing of the moose rumen from different geographical locations reveals a core ruminal methanogenic archaeal diversity and a differential ciliate protozoal diversity

1 reference

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27 May 2018

Evolutionary steps of ecophysiological adaptation and diversification of ruminants: a comparative view of their digestive system

1 reference

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27 May 2018

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract.

1 reference

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27 May 2018

The Sus operon: a model system for starch uptake by the human gut Bacteroidetes.

1 reference

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27 May 2018

Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps

1 reference

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27 May 2018

Fiber degradation potential of natural co-cultures of Neocallimastix frontalis and Methanobrevibacter ruminantium isolated from yaks (Bos grunniens) grazing on the Qinghai Tibetan Plateau

1 reference

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27 May 2018

Metagenome-assembled genomes uncover a global brackish microbiome

1 reference

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27 May 2018

The rumen microbial metagenome associated with high methane production in cattle

1 reference

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27 May 2018

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

1 reference

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27 May 2018

Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii

1 reference

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27 May 2018

Metagenomic Assembly and Draft Genome Sequence of an Uncharacterized Prevotella sp. from Nelore Rumen.

1 reference

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27 May 2018

Glycan complexity dictates microbial resource allocation in the large intestine

1 reference

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27 May 2018

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

1 reference

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27 May 2018

METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.

1 reference

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27 May 2018

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

1 reference

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27 May 2018

CDD: NCBI's conserved domain database

1 reference

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27 May 2018

Fast and sensitive protein alignment using DIAMOND

1 reference

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27 May 2018

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

1 reference

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27 May 2018

A polysaccharide utilization locus from an uncultured bacteroidetes phylotype suggests ecological adaptation and substrate versatility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Binning metagenomic contigs by coverage and composition

1 reference

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27 May 2018

Distribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Do rumen Bacteroidetes utilize an alternative mechanism for cellulose degradation?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Microbial and Carbohydrate Active Enzyme profile of buffalo rumen metagenome and their alteration in response to variation in the diet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Prokka: rapid prokaryotic genome annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

High-throughput DNA sequencing of the ruminal bacteria from moose (Alces alces) in Vermont, Alaska, and Norway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

The carbohydrate-active enzymes database (CAZy) in 2013

1 reference

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27 May 2018

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

1 reference

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27 May 2018

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

1 reference

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27 May 2018

Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria.

1 reference

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27 May 2018

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

The nonfermentable dietary fiber hydroxypropyl methylcellulose modulates intestinal microbiota

1 reference

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27 May 2018

Insight into the bacterial gut microbiome of the North American moose (Alces alces).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

1 reference

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27 May 2018

A biomolecular isolation framework for eco-systems biology.

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27 May 2018

Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci

1 reference

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27 May 2018

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

1 reference

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27 May 2018

Molecular diversity of methanogens in fecal samples from captive Sumatran orangutans (Pongo abelii).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

How glycan metabolism shapes the human gut microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Integrative analysis of environmental sequences using MEGAN4

1 reference

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27 May 2018

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis

1 reference

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27 May 2018

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

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27 May 2018

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

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27 May 2018

Variability of treponemes in the rumen of ruminants

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27 May 2018

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

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27 May 2018

Mining metagenomes for novel cellulase genes

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27 May 2018

Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis

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27 May 2018

The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions

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27 May 2018

Cultivation of a Synergistetes strain representing a previously uncultivated lineage

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27 May 2018

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1

1 reference

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27 May 2018

Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.

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27 May 2018

Evolution of mammals and their gut microbes

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27 May 2018

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

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27 May 2018

A robust species tree for the alphaproteobacteria

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27 May 2018

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

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27 May 2018

Targeted access to the genomes of low-abundance organisms in complex microbial communities.

1 reference

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27 May 2018

Characterization of a family 45 glycosyl hydrolase from Fibrobacter succinogenes S85.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5648042

27 May 2018

Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period

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27 May 2018

Genome sequencing in microfabricated high-density picolitre reactors

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27 May 2018

The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides

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27 May 2018

Mitsuokella jalaludinii sp. nov., from the rumens of cattle in Malaysia

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27 May 2018

Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR.

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27 May 2018

Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens

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27 May 2018

Cellulosome-like sequences in Archaeoglobus fulgidus: an enigmatic vestige of cohesin and dockerin domains

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27 May 2018

Dockerin-like sequences in cellulases and xylanases from the rumen cellulolytic bacterium Ruminococcus flavefaciens

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27 May 2018

Treponema saccharophilum sp. nov., a large pectinolytic spirochete from the bovine rumen

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27 May 2018

Basic local alignment search tool

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27 May 2018

Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome.

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16 August 2018

Development of hemicellulolytic enzyme mixtures for plant biomass deconstruction on target biotechnological applications.

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16 August 2018

Monitoring the rumen pectinolytic bacteria Treponema saccharophilum using real-time PCR.

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16 August 2018

Functional annotation of Fibrobacter succinogenes S85 carbohydrate active enzymes.

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16 August 2018

Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.

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16 August 2018

Degradation of forage chicory by ruminal fibrolytic bacteria.

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16 August 2018

Novel perspectives for evolving enzyme cocktails for lignocellulose hydrolysis in biorefineries

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21 January 2018

How do gut microbes break down dietary fiber?

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7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1038/ISMEJ.2017.108

1 reference

Europe PubMed Central

4 November 2017

1 reference

Europe PubMed Central

4 November 2017

1 reference

Europe PubMed Central

4 November 2017

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