(Q42773602)

20 February 2018

title

Comparative analysis of de novo transcriptome assembly (English)

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20 February 2018

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Kaitlin Clarke

1

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20 February 2018

Yi Yang

2

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20 February 2018

Ronald Marsh

3

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20 February 2018

Linglin Xie

4

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20 February 2018

Ke K Zhang

5

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20 February 2018

publication date

8 February 2013

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20 February 2018

Science in China. Series C: Life Sciences

published in

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20 February 2018

volume

56

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20 February 2018

issue

2

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20 February 2018

page(s)

156-162

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20 February 2018

describes a project that uses

MIRA

object named as

Mira

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

RNA-Seq Assembly - Are We There Yet?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Next-generation transcriptome assembly

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Synthetic spike-in standards for RNA-seq experiments

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Full-length transcriptome assembly from RNA-Seq data without a reference genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

TopHat: discovering splice junctions with RNA-Seq

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

ABySS: a parallel assembler for short read sequence data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Proposed methods for testing and selecting the ERCC external RNA controls

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Genome sequencing in microfabricated high-density picolitre reactors

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

27 May 2018

The phusion assembler

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Initial sequencing and analysis of the human genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

A new algorithm for DNA sequence assembly

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

Toward simplifying and accurately formulating fragment assembly

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5778448

10.1007/S11427-013-4444-X

16 August 2018

Identifiers

DOI

1 reference

20 February 2018

PMC publication ID

5778448

1 reference

20 February 2018

PubMed publication ID

23393031

1 reference

20 February 2018