(Q42848308)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane) (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

main subject

transmembrane protein

0 references

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Gabriel Studer

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

author name string

Marco Biasini

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

language of work or name

English

0 references

publication date

1 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

volume

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

issue

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

page(s)

i505-11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

14 March 2020

copyright license

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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27 May 2018

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Assessing the quality of modelled 3D protein structures using the ModFOLD server.

27 May 2018

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Critical assessment of methods of protein structure prediction (CASP)--round x

27 May 2018

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Definition and classification of evaluation units for CASP10

27 May 2018

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Protein modeling: what happened to the "protein structure gap"?

27 May 2018

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lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

27 May 2018

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kClust: fast and sensitive clustering of large protein sequence databases

27 May 2018

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Assessment of the assessment: evaluation of the model quality estimates in CASP10

27 May 2018

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27 May 2018

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27 May 2018

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The Protein Model Portal--a comprehensive resource for protein structure and model information

27 May 2018

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Improved model quality assessment using ProQ2.

27 May 2018

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CAD-score: a new contact area difference-based function for evaluation of protein structural models.

27 May 2018

1 reference

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Developing a high-quality scoring function for membrane protein structures based on specific inter-residue interactions

27 May 2018

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Improving your target-template alignment with MODalign

27 May 2018

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HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

27 May 2018

1 reference

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Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment

27 May 2018

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Toward the estimation of the absolute quality of individual protein structure models

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

OpenStructure: a flexible software framework for computational structural biology

27 May 2018

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Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.

27 May 2018

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Biophysical dissection of membrane proteins.

27 May 2018

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Outcome of a workshop on applications of protein models in biomedical research

27 May 2018

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The SWISS-MODEL Repository and associated resources

27 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Prediction of membrane-protein topology from first principles

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Local quality assessment in homology models using statistical potentials and support vector machines

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Positioning of proteins in membranes: a computational approach

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins

27 May 2018

1 reference

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OPM: orientations of proteins in membranes database

27 May 2018

1 reference

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Quantification of helix-helix binding affinities in micelles and lipid bilayers

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

The progress of membrane protein structure determination

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

PISCES: a protein sequence culling server

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Protein structure prediction and structural genomics

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

How membranes shape protein structure.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Reduced surface: an efficient way to compute molecular surfaces

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Comparative protein modelling by satisfaction of spatial restraints

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Recognition of errors in three-dimensional structures of proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Basic local alignment search tool

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Assessment of protein models with three-dimensional profiles

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Model quality assessment for membrane proteins.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

Improvement of statistical potentials and threading score functions using information maximization.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147910

10.1093/BIOINFORMATICS/BTU457

16 August 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/StuderBS14

14 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25161240%20AND%20SRC:MED&resulttype=core&format=json