(Q42914294)

English

Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the Iα subfamily

scientific article published on 17 June 2013

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scholarly article

1 reference

Europe PubMed Central

11 November 2017

Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the Iα subfamily (English)

1 reference

Europe PubMed Central

11 November 2017

Steven E. Brenner

5

object named as

Steven E Brenner

1 reference

Europe PubMed Central

11 November 2017

Barbara E. Engelhardt

object named as

Barbara E Engelhardt

2

0 references

Michael I. Jordan

4

object named as

Michael I Jordan

1 reference

Europe PubMed Central

11 November 2017

author name string

Kathryn E Muratore

1

1 reference

Europe PubMed Central

11 November 2017

John R Srouji

3

1 reference

Europe PubMed Central

11 November 2017

Jack F Kirsch

6

1 reference

Europe PubMed Central

11 November 2017

language of work or name

0 references

publication date

17 June 2013

1 reference

Europe PubMed Central

11 November 2017

1 reference

Europe PubMed Central

11 November 2017

81

1 reference

Europe PubMed Central

11 November 2017

9

1 reference

Europe PubMed Central

11 November 2017

1593-1609

1 reference

Europe PubMed Central

11 November 2017

Genome-scale phylogenetic function annotation of large and diverse protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Specific inhibition of the aspartate aminotransferase of Plasmodium falciparum

1 reference

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27 May 2018

Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

1 reference

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27 May 2018

The Pfam protein families database

1 reference

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27 May 2018

Structure, expression, and function of kynurenine aminotransferases in human and rodent brains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

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27 May 2018

Recombinant expression of twelve evolutionarily diverse subfamily Ialpha aminotransferases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

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27 May 2018

Protein molecular function prediction by Bayesian phylogenomics

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27 May 2018

The Universal Protein Resource (UniProt)

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27 May 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Transaminase activity in human blood

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27 May 2018

Potential for dramatic improvement in sequence alignment against structures of remote homologous proteins by extracting structural information from multiple structure alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

How does an enzyme evolved in vitro compare to naturally occurring homologs possessing the targeted function? Tyrosine aminotransferase from aspartate aminotransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

1 reference

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27 May 2018

Quantitative chimeric analysis of six specificity determinants that differentiate Escherichia coli aspartate from tyrosine aminotransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Intrinsic errors in genome annotation

1 reference

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27 May 2018

Methionine regeneration and aspartate aminotransferase in parasitic protozoa

1 reference

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27 May 2018

A general method for the quantitative analysis of functional chimeras: applications from site-directed mutagenesis and macromolecular association

1 reference

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27 May 2018

Gene ontology: tool for the unification of biology

1 reference

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27 May 2018

Characterization of the serogroup O11 O-antigen locus of Pseudomonas aeruginosa PA103

1 reference

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27 May 2018

PhhC is an essential aminotransferase for aromatic amino acid catabolism in Pseudomonas aeruginosa

1 reference

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27 May 2018

Crystal structures of Paracoccus denitrificans aromatic amino acid aminotransferase: a substrate recognition site constructed by rearrangement of hydrogen bond network

1 reference

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27 May 2018

Crystal structure of Saccharomyces cerevisiae cytosolic aspartate aminotransferase

1 reference

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27 May 2018

Directed evolution of an aspartate aminotransferase with new substrate specificities

1 reference

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27 May 2018

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

1 reference

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27 May 2018

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

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27 May 2018

A continuous coupled spectrophotometric assay for tyrosine aminotransferase activity with aromatic and other nonpolar amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Refinement and comparisons of the crystal structures of pig cytosolic aspartate aminotransferase and its complex with 2-methylaspartate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Paracoccus denitrificans aromatic amino acid aminotransferase: a model enzyme for the study of dual substrate recognition mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Evolutionary recruitment of biochemically specialized subdivisions of Family I within the protein superfamily of aminotransferases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Redesign of the substrate specificity of Escherichia coli aspartate aminotransferase to that of Escherichia coli tyrosine aminotransferase by homology modeling and site-directed mutagenesis

1 reference

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27 May 2018

Aminotransferases: demonstration of homology and division into evolutionary subgroups.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Escherichia coli aromatic amino acid aminotransferase: characterization and comparison with aspartate aminotransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Pseudomonas aeruginosa possesses homologues of mammalian phenylalanine hydroxylase and 4 alpha-carbinolamine dehydratase/DCoH as part of a three-component gene cluster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Crystal structure of the closed form of chicken cytosolic aspartate aminotransferase at 1.9 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

The aspartate aminotransferase gene family of Arabidopsis encodes isoenzymes localized to three distinct subcellular compartments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Chemical modification of a functional arginyl residue (Arg 292) of mitochondrial aspartate aminotransferase. Identification as the binding site for the distal carboxylate group of the substrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Three-dimensional structure of a pyridoxal-phosphate-dependent enzyme, mitochondrial aspartate aminotransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Isolation and DNA sequence of ADH3, a nuclear gene encoding the mitochondrial isozyme of alcohol dehydrogenase in Saccharomyces cerevisiae

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27 May 2018

Structural and functional role of the amino-terminal region of porcine cytosolic aspartate aminotransferase. Catalytic and structural properties of enzyme derivatives truncated on the amino-terminal side

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

The amino acid sequence of the aspartate aminotransferase from baker's yeast (Saccharomyces cerevisiae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3823064

27 May 2018

Contribution to catalysis and stability of the five cysteines in Escherichia coli aspartate aminotransferase. Preparation and properties of a cysteine-free enzyme

1 reference

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27 May 2018

AAT1, a gene encoding a mitochondrial aspartate aminotransferase in Saccharomyces cerevisiae

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27 May 2018

Escherichia coli mutants deficient in the aspartate and aromatic amino acid aminotransferases

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27 May 2018

The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli.

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27 May 2018

Construction of aminotransferase chimeras and analysis of their substrate specificity.

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27 May 2018

Three-dimensional structures of aspartate aminotransferase from Escherichia coli and its mutant enzyme at 2.5 A resolution.

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27 May 2018

The narrow substrate specificity of human tyrosine aminotransferase--the enzyme deficient in tyrosinemia type II.

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16 August 2018

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16 August 2018

Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor

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16 August 2018

An alternating least squares approach to inferring phylogenies from pairwise distances.

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16 August 2018

Recombinant tyrosine aminotransferase from Trypanosoma cruzi: structural characterization and site directed mutagenesis of a broad substrate specificity enzyme

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16 August 2018

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

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16 August 2018

Characterization of the apparent negative co-operativity induced in Escherichia coli aspartate aminotransferase by the replacement of Asp222 with alanine. Evidence for an extremely slow conformational change

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16 August 2018

Shift in pH-rate profile and enhanced discrimination between dicarboxylic and aromatic substrates in mitochondrial aspartate aminotransferase Y70H.

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16 August 2018

SATCHMO: sequence alignment and tree construction using hidden Markov models

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12 December 2020

based on heuristic

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Carbamylation of aspartate transaminase and the pK value of the active site lysyl residue

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https://pubmed.ncbi.nlm.nih.gov/23671031

12 December 2020

based on heuristic

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Functional roles of valine 37 and glycine 38 in the mobile loop of porcine cytosolic aspartate aminotransferase

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https://pubmed.ncbi.nlm.nih.gov/23671031

12 December 2020

based on heuristic

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Recombinant expression, purification, and characterization of three isoenzymes of aspartate aminotransferase from Arabidopsis thaliana

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https://pubmed.ncbi.nlm.nih.gov/23671031

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and partial characterization of a broad specificity aminotransferase from Leishmania mexicana promastigotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23671031

12 December 2020

based on heuristic

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Errors in genome annotation

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https://pubmed.ncbi.nlm.nih.gov/23671031

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A kinetic and equilibrium analysis of the glutamic oxaloacetate transaminase mechanism

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https://pubmed.ncbi.nlm.nih.gov/23671031

12 December 2020

based on heuristic

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Identifiers

10.1002/PROT.24318

1 reference

Europe PubMed Central

11 November 2017

1 reference

Europe PubMed Central

11 November 2017

1 reference

Europe PubMed Central

11 November 2017

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