(Q42944131)

11 November 2017

title

Molecular dynamics simulations of Aβ fibril interactions with β-sheet breaker peptides (English)

1 reference

11 November 2017

1

Neil J. Bruce

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20691234

18 June 2024

5

Catherine H. Schein

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20691234

18 June 2024

6

Richard A. Bryce

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20691234

18 June 2024

author name string

Deliang Chen

2

1 reference

11 November 2017

Shubhra G. Dastidar

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20691234

18 June 2024

Gabriel E. Marks

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20691234

18 June 2024

language of work or name

1 reference

4 August 2010

1 reference

full work available at URL

11 November 2017

https://api.elsevier.com/content/article/PII:S019697811000327X?httpAccept=text/xml

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

https://api.elsevier.com/content/article/PII:S019697811000327X?httpAccept=text/plain

18 June 2024

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

18 June 2024

1 reference

11 November 2017

volume

31

1 reference

11 November 2017

issue

11

1 reference

11 November 2017

page(s)

2100-2108

1 reference

Destabilization of human IAPP amyloid fibrils by proline mutations outside of the putative amyloidogenic domain: is there a critical amyloidogenic domain in human IAPP?

11 November 2017

cites work

1

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

3-p-Toluoyl-2-[4'-(3-diethylaminopropoxy)-phenyl]-benzofuran and 2-[4'-(3-diethylaminopropoxy)-phenyl]-benzofuran do not act as surfactants or micelles when inhibiting the aggregation of beta-amyloid peptide

18 June 2024

2

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Molecular dynamics with coupling to an external bath

18 June 2024

4

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Amyloid beta-protein: monomer structure and early aggregation states of Abeta42 and its Pro19 alloform.

18 June 2024

5

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Structure and dynamics of parallel beta-sheets, hydrophobic core, and loops in Alzheimer's A beta fibrils

18 June 2024

6

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Molecular dynamics simulations of Alzheimer's beta-amyloid protofilaments

18 June 2024

7

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

The Amber biomolecular simulation programs

18 June 2024

9

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Computational selection of inhibitors of Abeta aggregation and neuronal toxicity.

18 June 2024

10

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Accounting for ligand-bound metal ions in docking small molecules on adenylyl cyclase toxins

18 June 2024

11

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

18 June 2024

12

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Inhibition of Alzheimer's disease beta-amyloid aggregation, neurotoxicity, and in vivo deposition by nitrophenols: implications for Alzheimer's therapy

18 June 2024

13

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

18 June 2024

14

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Disrupting beta-amyloid aggregation for Alzheimer disease treatment

18 June 2024

15

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Beta-amyloid protein aggregation

18 June 2024

16

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Contrasting disease and nondisease protein aggregation by molecular simulation

18 June 2024

17

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology.

18 June 2024

18

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Role of islet amyloid in type 2 diabetes mellitus

18 June 2024

19

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Islet amyloid: a critical entity in the pathogenesis of type 2 diabetes

18 June 2024

20

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Increased risk of type 2 diabetes in Alzheimer disease

18 June 2024

21

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Comparison of simple potential functions for simulating liquid water

18 June 2024

22

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Design of metal-binding sites onto self-assembled peptide fibrils

18 June 2024

24

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Trehalose differentially inhibits aggregation and neurotoxicity of beta-amyloid 40 and 42.

18 June 2024

25

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

3D structure of Alzheimer's amyloid-beta(1-42) fibrils

18 June 2024

26

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function

18 June 2024

27

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Polymorphic fibril formation by residues 10-40 of the Alzheimer's beta-amyloid peptide

18 June 2024

28

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Reduction of amyloid load and cerebral damage in a transgenic mouse model of Alzheimer's disease by treatment with a beta-sheet breaker peptide

18 June 2024

29

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Solid state NMR reveals a pH-dependent antiparallel beta-sheet registry in fibrils formed by a beta-amyloid peptide

18 June 2024

30

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMR

18 June 2024

31

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Experimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils

18 June 2024

32

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

18 June 2024

33

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Solubility as a function of protein structure and solvent components

18 June 2024

35

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Folding proteins in fatal ways

18 June 2024

36

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Beta-sheet breaker peptides inhibit fibrillogenesis in a rat brain model of amyloidosis: implications for Alzheimer's therapy

18 June 2024

37

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Replica-exchange molecular dynamics method for protein folding

18 June 2024

39

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Implicit nonpolar solvent models

18 June 2024

40

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

How well does Poisson-Boltzmann implicit solvent agree with explicit solvent? A quantitative analysis

18 June 2024

41

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Rifampicin prevents the aggregation and neurotoxicity of amyloid beta protein in vitro.

18 June 2024

42

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Theory and applications of the generalized Born solvation model in macromolecular simulations

18 June 2024

43

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Characterization of amyloid structures at the molecular level by solid state nuclear magnetic resonance spectroscopy

18 June 2024

44

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Molecular structure of amyloid fibrils: insights from solid-state NMR.

18 June 2024

45

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Nucleation of huntingtin aggregation in cells

18 June 2024

47

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Alanine scanning mutagenesis of Abeta(1-40) amyloid fibril stability

18 June 2024

48

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Direct detection of transient alpha-helical states in islet amyloid polypeptide

18 June 2024

49

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Prolines and amyloidogenicity in fragments of the Alzheimer's peptide beta/A4

18 June 2024

50

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Molecular structures of quiescently grown and brain-derived polymorphic fibrils of the Alzheimer amyloid abeta9-40 peptide: a comparison to agitated fibrils

18 June 2024

51

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Phenol red interacts with the protofibril-like oligomers of an amyloidogenic hexapeptide NFGAIL through both hydrophobic and aromatic contacts.

18 June 2024

52

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease Abeta(16-22) peptide probed by molecular dynamics simulations

18 June 2024

53

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Dual binding modes of Congo red to amyloid protofibril surface observed in molecular dynamics simulations

18 June 2024

54

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

Exploration of the mechanism for LPFFD inhibiting the formation of beta-sheet conformation of A beta(1-42) in water

18 June 2024

55

1 reference

https://api.crossref.org/works/10.1016/J.PEPTIDES.2010.07.015

18 June 2024

Identifiers

1 reference

11 November 2017

1 reference