(Q43021499)

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Increased flexibility enhances misincorporation: temperature effects on nucleotide incorporation opposite a bulky carcinogen-DNA adduct by a Y-family DNA polymerase

scientific article published on 6 November 2006

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scholarly article

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Europe PubMed Central

PubMed publication ID

12 November 2017

Increased flexibility enhances misincorporation: temperature effects on nucleotide incorporation opposite a bulky carcinogen-DNA adduct by a Y-family DNA polymerase (English)

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Europe PubMed Central

PubMed publication ID

12 November 2017

6

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Suse Broyde

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Europe PubMed Central

PubMed publication ID

12 November 2017

author name string

Rebecca A Perlow-Poehnelt

1

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Europe PubMed Central

PubMed publication ID

12 November 2017

Ilya Likhterov

2

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Europe PubMed Central

PubMed publication ID

12 November 2017

Lihua Wang

3

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Europe PubMed Central

PubMed publication ID

12 November 2017

David A Scicchitano

4

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Europe PubMed Central

PubMed publication ID

12 November 2017

Nicholas E Geacintov

5

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Europe PubMed Central

PubMed publication ID

12 November 2017

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publication date

6 November 2006

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Europe PubMed Central

PubMed publication ID

12 November 2017

number of pages

12

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inferred from page(s)

Journal of Biological Chemistry

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Europe PubMed Central

PubMed publication ID

12 November 2017

282

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Europe PubMed Central

PubMed publication ID

12 November 2017

2

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Europe PubMed Central

PubMed publication ID

12 November 2017

1397-1408

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Europe PubMed Central

PubMed publication ID

12 November 2017

Low fidelity DNA synthesis by a y family DNA polymerase due to misalignment in the active site.

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21 January 2018

The "tale" of UmuD and its role in SOS mutagenesis

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Translesion replication of benzo[a]pyrene and benzo[c]phenanthrene diol epoxide adducts of deoxyadenosine and deoxyguanosine by human DNA polymerase iota

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Human DNA polymerase mu (Pol mu) exhibits an unusual replication slippage ability at AAF lesion

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Lesion bypass in yeast cells: Pol eta participates in a multi-DNA polymerase process

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21 January 2018

Structure-based interpretation of missense mutations in Y-family DNA polymerases and their implications for polymerase function and lesion bypass

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Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication

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A plethora of lesion-replicating DNA polymerases

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Accuracy, lesion bypass, strand displacement and translocation by DNA polymerases

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Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta

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Stepwise translocation of Dpo4 polymerase during error-free bypass of an oxoG lesion

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

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Structure of the replicating complex of a pol alpha family DNA polymerase

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

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21 January 2018

Structure and mechanism of DNA polymerases

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DNA polymerase catalysis in the absence of Watson-Crick hydrogen bonds: analysis by single-turnover kinetics

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Structure of Taq polymerase with DNA at the polymerase active site

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DNA replication fidelity

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21 January 2018

Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

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21 January 2018

Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity

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21 January 2018

Minor Groove Interactions between Polymerase and DNA: More Essential to Replication than Watson-Crick Hydrogen Bonds?

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21 January 2018

Functional hydrogen-bonding map of the minor groove binding tracks of six DNA polymerases

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21 January 2018

Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase

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21 January 2018

Pre-steady-state kinetic studies of the fidelity of Sulfolobus solfataricus P2 DNA polymerase IV.

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21 January 2018

The spacious active site of a Y-family DNA polymerase facilitates promiscuous nucleotide incorporation opposite a bulky carcinogen-DNA adduct: elucidating the structure-function relationship through experimental and computational approaches

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21 January 2018

Replication of a cis-syn thymine dimer at atomic resolution

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21 January 2018

Base sequence dependence of in vitro translesional DNA replication past a bulky lesion catalyzed by the exo- Klenow fragment of Pol I.

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21 January 2018

Kinetics of nucleotide incorporation opposite polycyclic aromatic hydrocarbon-DNA adducts by processive bacteriophage T7 DNA polymerase

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21 January 2018

Structure of a high fidelity DNA polymerase bound to a benzo[a]pyrene adduct that blocks replication

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21 January 2018

NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity

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21 January 2018

Are base substitution and frameshift mutagenesis pathways interrelated? An analysis based upon studies of the frequencies and specificities of mutations induced by the (+)-anti diol epoxide of benzo[a]pyrene

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21 January 2018

The Major, N2-Gua Adduct of the (+)-anti-Benzo[a]pyrene Diol Epoxide Is Capable of Inducing G.fwdarw.A and G.fwdarw.C, in Addition to G.fwdarw.T, Mutations

1 reference

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21 January 2018

Efficiency and accuracy of SOS-induced DNA polymerases replicating benzo[a]pyrene-7,8-diol 9,10-epoxide A and G adducts

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21 January 2018

Mutagenic potential of stereoisomeric bay region (+)- and (-)-cis-anti-benzo[a]pyrene diol epoxide-N2-2'-deoxyguanosine adducts in Escherichia coli and simian kidney cells

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21 January 2018

trans-Lesion synthesis past bulky benzo[a]pyrene diol epoxide N2-dG and N6-dA lesions catalyzed by DNA bypass polymerases

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Benzo[a]pyrene diol epoxide-deoxyguanosine adducts are accurately bypassed by yeast DNA polymerase zeta in vitro

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Poleta, Polzeta and Rev1 together are required for G to T transversion mutations induced by the (+)- and (-)-trans-anti-BPDE-N2-dG DNA adducts in yeast cells

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Quantitative analysis of translesion DNA synthesis across a benzo[a]pyrene-guanine adduct in mammalian cells: the role of DNA polymerase kappa

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21 January 2018

Mutagenesis studies with four stereoisomeric N2-dG benzo[a]pyrene adducts in the identical 5'-CGC sequence used in NMR studies: G->T mutations dominate in each case

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21 January 2018

Sequence specific mutagenesis of the major (+)-anti-benzo[a]pyrene diol epoxide-DNA adduct at a mutational hot spot in vitro and in Escherichia coli cells.

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21 January 2018

The major, N2-dG adduct of (+)-anti-B[a]PDE induces G-->A mutations in a 5'-AGA-3' sequence context.

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21 January 2018

Mutational specificity of the (+)-anti-diol epoxide of benzo[a]pyrene in a supF gene of an Escherichia coli plasmid: DNA sequence context influences hotspots, mutagenic specificity and the extent of SOS enhancement of mutagenesis.

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21 January 2018

Error-free and error-prone lesion bypass by human DNA polymerase kappa in vitro

1 reference

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21 January 2018

All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis

1 reference

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21 January 2018

Mirror image stereoisomers of the major benzo[a]pyrene N2-dG adduct are bypassed by different lesion-bypass DNA polymerases in E. coli.

1 reference

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21 January 2018

Spectroscopic characteristics and site I/site II classification of cis and trans benzo[a]pyrene diolepoxide enantiomer-guanosine adducts in oligonucleotides and polynucleotides

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21 January 2018

Effects of base sequence context on translesion synthesis past a bulky (+)-trans-anti-B[a]P-N2-dG lesion catalyzed by the Y-family polymerase pol kappa.

1 reference

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21 January 2018

Role of hydrophobic effects in the reaction of a polynuclear aromatic diol epoxide with oligodeoxynucleotides in aqueous solutions

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Synthesis and characterization of covalent adducts derived from the binding of benzo[a]pyrene diol expoxide to a -GGG- sequence in a deoxyoligonucleotide

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Evading the proofreading machinery of a replicative DNA polymerase: induction of a mutation by an environmental carcinogen

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21 January 2018

Toward understanding the mutagenicity of an environmental carcinogen: structural insights into nucleotide incorporation preferences

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Extending the understanding of mutagenicity: structural insights into primer-extension past a benzo[a]pyrene diol epoxide-DNA adduct

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The Protein Data Bank

1 reference

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Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing

1 reference

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21 January 2018

Stereochemical origin of opposite orientations in DNA adducts derived from enantiomeric anti-benzo[a]pyrene diol epoxides with different tumorigenic potentials.

1 reference

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21 January 2018

Preferential misincorporation of purine nucleotides by human DNA polymerase eta opposite benzo[a]pyrene 7,8-diol 9,10-epoxide deoxyguanosine adducts

1 reference

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21 January 2018

The efficiency and specificity of apurinic/apyrimidinic site bypass by human DNA polymerase eta and Sulfolobus solfataricus Dpo4.

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21 January 2018

Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNA

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21 January 2018

Rapid quench kinetic analysis of polymerases, adenosinetriphosphatases, and enzyme intermediates

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DNA polymerase fidelity: kinetics, structure, and checkpoints

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Mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase IV.

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Double-stranded DNA stereoselectively binds benzo(a)pyrene diol epoxides

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21 January 2018

Identifiers

10.1074/JBC.M606769200

1 reference

Europe PubMed Central

PubMed publication ID

12 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

12 November 2017

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