(Q43553705)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

title

Camps 2.0: exploring the sequence and structure space of prokaryotic, eukaryotic, and viral membrane proteins (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

0 references

1 reference

Antonio J Martin-Galiano

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

author name string

Sindy Neumann

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Holger Hartmann

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Angelika Fuchs

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Dmitrij Frishman

5

1 reference

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19 January 2020

language of work or name

English

0 references

publication date

28 December 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

volume

80

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

page(s)

839-857

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

Data growth and its impact on the SCOP database: new developments

19 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

21 January 2018

1 reference

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21 January 2018

The Protein Data Bank

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One thousand families for the molecular biologist

21 January 2018

1 reference

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Protein superfamilies and domain superfolds

21 January 2018

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A re-estimation for the total numbers of protein folds and superfamilies

21 January 2018

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Estimating the number of protein folds.

21 January 2018

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Estimating the number of protein folds and families from complete genome data

21 January 2018

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Monte Carlo estimation of the number of possible protein folds: Effects of sampling bias and folds distributions

21 January 2018

1 reference

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Progress towards mapping the universe of protein folds

21 January 2018

1 reference

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The number of protein folds and their distribution over families in nature.

21 January 2018

1 reference

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Review: what can structural classifications reveal about protein evolution?

21 January 2018

1 reference

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The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies

21 January 2018

1 reference

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Architecture of helix bundle membrane proteins: an analysis of cytochrome c oxidase from bovine mitochondria

21 January 2018

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The versatile beta-barrel membrane protein

21 January 2018

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GPCRDB: information system for G protein-coupled receptors

21 January 2018

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The Transporter Classification Database: recent advances

21 January 2018

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Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.

21 January 2018

1 reference

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A limited universe of membrane protein families and folds

21 January 2018

1 reference

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A survey of integral alpha-helical membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Defining the fold space of membrane proteins: the CAMPS database

21 January 2018

1 reference

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The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

21 January 2018

1 reference

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A combined transmembrane topology and signal peptide prediction method

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

NCBI Reference Sequences: current status, policy and new initiatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

An efficient algorithm for large-scale detection of protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Finding protein and nucleotide similarities with FASTA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Multiple sequence alignment with the Clustal series of programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

A general model of G protein-coupled receptor sequences and its application to detect remote homologs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

SIMAP--structuring the network of protein similarities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

An initial strategy for comparing proteins at the domain architecture level

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Annotation transfer for genomics: measuring functional divergence in multi-domain proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Ongoing and future developments at the Universal Protein Resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

BLAST+: architecture and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

DaliLite workbench for protein structure comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

The ENZYME database in 2000

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

MPtopo: A database of membrane protein topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

OPM: orientations of proteins in membranes database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

TargetDB: a target registration database for structural genomics projects

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

TOPDB: topology data bank of transmembrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Identification of transmembrane protein functions by binary topology patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Fold classification based on secondary structure--how much is gained by including loop topology?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

The effect of loops on the structural organization of alpha-helical membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Prediction of the coupling specificity of G protein coupled receptors to their G proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

The COG database: an updated version includes eukaryotes

21 January 2018

1 reference

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eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

21 January 2018

1 reference

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21 January 2018

1 reference

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Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Distinguishing Homologous from Analogous Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Twilight zone of protein sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Conservation of distantly related membrane proteins: photosynthetic reaction centers share a common structural core

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Identification of related proteins with weak sequence identity using secondary structure information

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

An HMM posterior decoder for sequence feature prediction that includes homology information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Increased coverage of protein families with the blocks database servers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Pfam: a comprehensive database of protein domain families based on seed alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Pfam: clans, web tools and services

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

A comparison of sequence and structure protein domain families as a basis for structural genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

SUPFAM: a database of sequence superfamilies of protein domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

Improved detection of homologous membrane proteins by inclusion of information from topology predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

A unifold, mesofold, and superfold model of protein fold use

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23242

21 January 2018

Identifiers

DOI

10.1002/PROT.23242

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22213543%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference