(Q43615911)

25 November 2017

Robustness to divergence time underestimation when inferring species trees from estimated gene trees (English)

1 reference

25 November 2017

Michael DeGiorgio

1

1 reference

PubMed ID

23988674

25 November 2017

James H Degnan

series ordinal

2

1 reference

25 November 2017

29 August 2013

1 reference

25 November 2017

1 reference

25 November 2017

63

1 reference

25 November 2017

1

1 reference

25 November 2017

66-82

1 reference

Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives

25 November 2017

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Estimating divergence times in large phylogenetic trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Species trees from highly incongruent gene trees in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

SpedeSTEM: a rapid and accurate method for species delimitation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Demographic history and genetic differentiation in apes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Improvements to a class of distance matrix methods for inferring species trees from gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

What is the danger of the anomaly zone for empirical phylogenetics?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

iGLASS: an improvement to the GLASS method for estimating species trees from gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

The accuracy of species tree estimation under simulation: a comparison of methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Pleistocene speciation in the genus Populus (salicaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Phybase: an R package for species tree analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Maximum tree: a consistent estimator of the species tree.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Estimating species phylogenies using coalescence times among sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Inferring phylogeny despite incomplete lineage sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Applications of next-generation sequencing to phylogeography and phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Incomplete lineage sorting: consistent phylogeny estimation from multiple loci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

APE: Analyses of Phylogenetics and Evolution in R language

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Simulating trees with a fixed number of extant species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

SuperFine: fast and accurate supertree estimation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Species tree inference by minimizing deep coalescences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYT059

1 reference

25 November 2017

1 reference

PubMed ID

23988674