(Q43700983)

26 November 2017

PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics (English)

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26 November 2017

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Cheng Chang

4

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author name string

Ning Li

1

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26 November 2017

Songfeng Wu

2

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26 November 2017

Chengpu Zhang

3

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26 November 2017

Jiyang Zhang

5

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26 November 2017

Jie Ma

6

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26 November 2017

Liwei Li

7

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26 November 2017

Xiaohong Qian

8

1 reference

26 November 2017

Ping Xu

9

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26 November 2017

Yunping Zhu

10

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26 November 2017

Fuchu He

11

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26 November 2017

1 June 2012

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26 November 2017

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26 November 2017

12

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26 November 2017

11

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26 November 2017

1720-1725

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Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics.

26 November 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Bayesian nonparametric model for the validation of peptide identification in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Accurate and sensitive peptide identification with Mascot Percolator

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Improving the sensitivity of MASCOT search results validation by combining new features with Bayesian nonparametric model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Qscore: an algorithm for evaluating SEQUEST database search results

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Analysis and validation of proteomic data generated by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

A refined method to calculate false discovery rates for peptide identification using decoy databases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Integrated post-experiment monoisotopic mass refinement: an integrated approach to accurately assign monoisotopic precursor masses to tandem mass spectrometric data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Decoy Methods for Assessing False Positives and False Discovery Rates in Shotgun Proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Comparison of novel decoy database designs for optimizing protein identification searches using ABRF sPRG2006 standard MS/MS data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

Quality assessments of peptide-spectrum matches in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100167

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100167

1 reference

26 November 2017

1 reference