(Q43704553)

26 November 2017

MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis (English)

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26 November 2017

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26 November 2017

6

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26 November 2017

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Huub C J Hoefsloot

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author name string

A Marcel Willemsen

1

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26 November 2017

Huub C J Hoefsloot

3

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26 November 2017

Margriet M W B Hendriks

4

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26 November 2017

S Aljoscha Wahl

5

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26 November 2017

Age K Smilde

7

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26 November 2017

Antoine H C van Kampen

8

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26 November 2017

15 October 2014

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26 November 2017

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26 November 2017

11

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26 November 2017

1

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26 November 2017

137-145

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26 November 2017

Biological robustness

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https://api.crossref.org/works/10.1039%2FC4MB00510D

Mathematical models in microbial systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Mediterranean diet and carotid atherosclerosis in the Northern Manhattan Study

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Cellular decision making and biological noise: from microbes to mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Decision making in living cells: lessons from a simple system

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Reversible and noisy progression towards a commitment point enables adaptable and reliable cellular decision-making

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Strategies for cellular decision-making

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

It is all about metabolic fluxes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Metabolic-flux analysis of Saccharomyces cerevisiae CEN.PK113-7D based on mass isotopomer measurements of (13)C-labeled primary metabolites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

13C metabolic flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

What is flux balance analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Dynamic flux balance analysis of diauxic growth in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Rational design of ¹³C-labeling experiments for metabolic flux analysis in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Determination of the cytosolic free NAD/NADH ratio in Saccharomyces cerevisiae under steady-state and highly dynamic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Comparison and analysis of objective functions in flux balance analysis

21 January 2018

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https://api.crossref.org/works/10.1039%2FC4MB00510D

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Flux balance analysis in the era of metabolomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics

21 January 2018

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https://api.crossref.org/works/10.1039%2FC4MB00510D

Estimation of dynamic flux profiles from metabolic time series data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Living with heterogeneities in bioreactors: understanding the effects of environmental gradients on cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Global test for metabolic pathway differences between conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

An in vivo data-driven framework for classification and quantification of enzyme kinetics and determination of apparent thermodynamic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

In vivo dynamics of the pentose phosphate pathway in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Multidimensional optimality of microbial metabolism

21 January 2018

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https://api.crossref.org/works/10.1039%2FC4MB00510D

Shifts in growth strategies reflect tradeoffs in cellular economics

21 January 2018

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https://api.crossref.org/works/10.1039%2FC4MB00510D

Integrated energy and flux balance based multiobjective framework for large-scale metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

PAGE: parametric analysis of gene set enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Cytoscape 2.8: new features for data integration and network visualization

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

13CFLUX2--high-performance software suite for (13)C-metabolic flux analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Computational tools for isotopically instationary 13C labeling experiments under metabolic steady state conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach

21 January 2018

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https://api.crossref.org/works/10.1039%2FC4MB00510D

Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Integration of expression data in genome-scale metabolic network reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Energy balance for analysis of complex metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

k-OptForce: integrating kinetics with flux balance analysis for strain design

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC4MB00510D

21 January 2018

Identifiers

DOI

10.1039/C4MB00510D

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26 November 2017

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