(Q43909373)

28 November 2017

title

Molecular modeling of class I and II alleles of the major histocompatibility complex in Salmo salar (English)

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28 November 2017

Salmo salar

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2

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28 November 2017

Constanza Cárdenas

1

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28 November 2017

Pablo Conejeros

3

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28 November 2017

Gloria Arenas

4

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28 November 2017

Sergio Marshall

5

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28 November 2017

F Javier Luque

6

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28 November 2017

publication date

10 October 2010

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Journal of Computer - Aided Molecular Design

28 November 2017

published in

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28 November 2017

volume

24

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28 November 2017

issue

12

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28 November 2017

page(s)

1035-1051

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https://scigraph.springernature.com/pub.10.1007/s10822-010-9387-8

28 November 2017

exact match

0 references

cites work

A community resource benchmarking predictions of peptide binding to MHC-I molecules

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS10822-010-9387-8

Major histocompatibility lineages and immune gene function in teleost fishes: the road not taken

21 January 2018

1 reference

12 December 2020

Physical and genetic mapping of the rainbow trout major histocompatibility regions: evidence for duplication of the class I region

1 reference

12 December 2020

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

1 reference

12 December 2020

A comparative study of MHC Class-II HLA-DRbeta1*0401-Col II and HLA-DRbeta1*0101-HA complexes: a theoretical point of view.

1 reference

12 December 2020

Specific MHC class II B alleles associated with resistance to Edwardsiella tarda in turbot, Psetta maxima (L.).

1 reference

12 December 2020

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

1 reference

12 December 2020

The MHC Class II-Associated Chicken Invariant Chain Shares Functional Properties with Its Mammalian Homologs

1 reference

12 December 2020

The crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity

1 reference

12 December 2020

Empirical scale of side-chain conformational entropy in protein folding

1 reference

12 December 2020

What are the dielectric "constants" of proteins and how to validate electrostatic models?

1 reference

12 December 2020

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

1 reference

12 December 2020

QMEAN: A comprehensive scoring function for model quality assessment.

1 reference

12 December 2020

Alternate forms of MHC class II-associated invariant chain are not produced by alternative splicing in rainbow trout (Oncorhynchus mykiss) but are encoded by separate genes

1 reference

12 December 2020

Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA.

1 reference

12 December 2020

The optimization of peptide cargo bound to MHC class I molecules by the peptide-loading complex

1 reference

12 December 2020

Rapid and accurate prediction of binding free energies for saquinavir-bound HIV-1 proteases.

1 reference

12 December 2020

NetMHCpan, a method for MHC class I binding prediction beyond humans

1 reference

12 December 2020

SYFPEITHI: database for MHC ligands and peptide motifs

1 reference

12 December 2020

ProPred: prediction of HLA-DR binding sites.

1 reference

12 December 2020

Peptide length preferences for rat and mouse MHC class I molecules using random peptide libraries

1 reference

12 December 2020

The immune epitope database 2.0.

1 reference

12 December 2020

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

12 December 2020

Side chain substitution benchmark for peptide/MHC interaction.

1 reference

12 December 2020

Resistance of common carp (Cyprinus carpio L.) to Cyprinid herpesvirus-3 is influenced by major histocompatibility (MH) class II B gene polymorphism.

1 reference

12 December 2020

Class II MHC peptide loading by the professionals

1 reference

12 December 2020

Modeling the interactions of a peptide-major histocompatibility class I ligand with its receptors. I. Recognition by two alpha beta T cell receptors

1 reference

12 December 2020

Beyond self and nonself: fuzzy recognition of the immune system

1 reference

12 December 2020

Prediction of T-cell epitope

1 reference

12 December 2020

1 reference

12 December 2020

WebLogo: A Sequence Logo Generator

1 reference

12 December 2020

Wave function analysis of MHC-peptide interactions

1 reference

12 December 2020

The salmonid MHC class I: more ancient loci uncovered

1 reference

12 December 2020

A critical cross-validation of high throughput structural binding prediction methods for pMHC

1 reference

12 December 2020

Multiple expressed MHC class II loci in salmonids; details of one non-classical region in Atlantic salmon (Salmo salar)

1 reference

12 December 2020

How specific MHC class I and class II combinations affect disease resistance against infectious salmon anaemia in Atlantic salmon (Salmo salar)

1 reference

12 December 2020

Major histocompatibility polymorphism associated with resistance towards amoebic gill disease in Atlantic salmon (Salmo salar L.).

1 reference

12 December 2020

Accurate prediction of the relative potencies of members of a series of kinase inhibitors using molecular docking and MM-GBSA scoring

1 reference

12 December 2020

Molecular cloning, differential expression and 3D structural analysis of the MHC class-II beta chain from sea bass (Dicentrarchus labrax L.).

1 reference

12 December 2020

The effect of specific MHC class I and class II combinations on resistance to furunculosis in Atlantic salmon (Salmo salar)

1 reference

12 December 2020

Prediction of MHC class I binding peptides using profile motifs.

1 reference

12 December 2020

ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005.

1 reference

12 December 2020

On the calculation of binding free energies using continuum methods: application to MHC class I protein-peptide interactions

1 reference

12 December 2020

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

1 reference

12 December 2020

Nonlinkage of major histocompatibility complex class I and class II loci in bony fishes

1 reference

12 December 2020

Expression and characterization of recombinant single-chain salmon class I MHC fused with beta2-microglobulin with biological activity

1 reference

12 December 2020

MHC class II molecules on the move for successful antigen presentation

1 reference

12 December 2020

The three-dimensional structure of peptide-MHC complexes

1 reference

12 December 2020

The antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2

1 reference

12 December 2020

Secondary structure and 3D homology modeling of grass carp (Ctenopharyngodon idellus) major histocompatibility complex class I molecules.

1 reference

12 December 2020

Very fast empirical prediction and rationalization of protein pKa values

1 reference

12 December 2020

Allele effects in MHC-peptide interactions: a theoretical analysis of HLA-DRbeta1*0101-HA and HLA-DRbeta1*0401-HA complexes

1 reference

12 December 2020

Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules

1 reference

12 December 2020

Peptide-binding motif prediction by using phage display library for SasaUBA*0301, a resistance haplotype of MHC class I molecule from Atlantic Salmon (Salmo salar).

1 reference

12 December 2020

Sequence logos: a new way to display consensus sequences

1 reference

12 December 2020

Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide

1 reference

12 December 2020

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

1 reference

12 December 2020

Molecular modelling of co-receptor CD8αα and its complex with MHC class I and T-cell receptor in sea bream (Sparus aurata)

1 reference

12 December 2020

The major histocompatibility class I locus in Atlantic salmon (Salmo salar L.): polymorphism, linkage analysis and protein modelling.

1 reference

12 December 2020

Optimized Radii for Poisson-Boltzmann Calculations with the AMBER Force Field

1 reference

12 December 2020

The known unknowns of antigen processing and presentation.

1 reference

12 December 2020

Bayesian statistical analysis of protein side-chain rotamer preferences

1 reference

12 December 2020

Side-chain conformational entropy in protein folding

1 reference

12 December 2020

Calculation of cyclodextrin binding affinities: energy, entropy, and implications for drug design

1 reference

12 December 2020

Clustal W and Clustal X version 2.0

1 reference

12 December 2020

Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization

1 reference

12 December 2020

Fish major histocompatibility complex genes: an expansion.

1 reference

12 December 2020

Ligand configurational entropy and protein binding

1 reference

12 December 2020

Quantum chemical analysis explains hemagglutinin peptide–MHC Class II molecule HLA-DRβ1*0101 interactions

1 reference

12 December 2020

The IMGT/HLA database

1 reference

12 December 2020

Expression of MHC class I pathway genes in response to infectious salmon anaemia virus in Atlantic salmon (Salmo salar L.) cells

1 reference

12 December 2020

10.1007/S10822-010-9387-8

Identifiers

DOI

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journals/jcamd/CardenasBCAML10

28 November 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1040903209

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Fatcat ID

release_acdwtqrccjcypl7necpzqq2sde

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/acdwtqrccjcypl7necpzqq2sde

24 November 2022

mapped directly with Wikidata item

1 reference