(Q44282033)

1 December 2017

title

Identifying complete RNA structural ensembles including pseudoknots (English)

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1 December 2017

Aditi Gupta

1

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1 December 2017

Reazur Rahman

series ordinal

2

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1 December 2017

Kejie Li

series ordinal

3

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1 December 2017

Michael Gribskov

series ordinal

4

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1 December 2017

publication date

1 February 2012

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1 December 2017

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1 December 2017

volume

9

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1 December 2017

issue

2

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1 December 2017

page(s)

187-199

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Structural and functional aspects of RNA pseudoknots

1 December 2017

cites work

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An RNA pseudoknot as the molecular switch for translation of the repZ gene encoding the replication initiator of IncIalpha plasmid ColIb-P9.

21 January 2018

1 reference

The telomerase RNA pseudoknot is critical for the stable assembly of a catalytically active ribonucleoprotein

21 January 2018

1 reference

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

21 January 2018

1 reference

Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function

21 January 2018

1 reference

Long-Range Structure in Ribonuclease P RNA

21 January 2018

1 reference

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

21 January 2018

1 reference

Functional analysis of the SRV-1 RNA frameshifting pseudoknot.

21 January 2018

1 reference

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting

21 January 2018

1 reference

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

21 January 2018

1 reference

Vienna RNA secondary structure server

21 January 2018

1 reference

Fast algorithm for predicting the secondary structure of single-stranded RNA

21 January 2018

1 reference

The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing

21 January 2018

1 reference

Folding kinetics for the conformational switch between alternative RNA structures

21 January 2018

1 reference

A ribosomal function is necessary for efficient splicing of the T4 phage thymidylate synthase intron in vivo

21 January 2018

1 reference

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

21 January 2018

1 reference

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures

21 January 2018

1 reference

RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

21 January 2018

1 reference

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

21 January 2018

1 reference

RNA multi-structure landscapes. A study based on temperature dependent partition functions.

21 January 2018

1 reference

RNA pseudoknot prediction in energy-based models

21 January 2018

1 reference

A dynamic programming algorithm for RNA structure prediction including pseudoknots

21 January 2018

1 reference

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

21 January 2018

1 reference

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

21 January 2018

1 reference

High sensitivity RNA pseudoknot prediction

21 January 2018

1 reference

DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model

21 January 2018

1 reference

KnotSeeker: heuristic pseudoknot detection in long RNA sequences.

21 January 2018

1 reference

DINAMelt web server for nucleic acid melting prediction

21 January 2018

1 reference

Predicting RNA pseudoknot folding thermodynamics

21 January 2018

1 reference

Predicting structures and stabilities for H-type pseudoknots with interhelix loops.

21 January 2018

1 reference

A partition function algorithm for nucleic acid secondary structure including pseudoknots

21 January 2018

1 reference

PseudoBase: a database with RNA pseudoknots

21 January 2018

1 reference

PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots

21 January 2018

1 reference

On finding all suboptimal foldings of an RNA molecule

21 January 2018

1 reference

Improved free energy parameters for RNA pseudoknotted secondary structure prediction

21 January 2018

1 reference

RNA chaperones and the RNA folding problem

21 January 2018

1 reference

A guide to ions and RNA structure

21 January 2018

1 reference

Charge density of divalent metal cations determines RNA stability

21 January 2018

1 reference

Prediction of RNA secondary structure by free energy minimization

21 January 2018

1 reference

Improved Estimation of Secondary Structure in Ribonucleic Acids

21 January 2018

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

Tools for the automatic identification and classification of RNA base pairs

21 January 2018

1 reference

The tmRNA Website: invasion by an intron

21 January 2018

1 reference

21 January 2018

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The Ribonuclease P Database

21 January 2018

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RNA STRAND: the RNA secondary structure and statistical analysis database

21 January 2018

1 reference

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

21 January 2018

1 reference

Pattern Matching in RNA Structures

21 January 2018

1 reference

UNAFold: software for nucleic acid folding and hybridization

21 January 2018

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1007/978-1-60327-429-6_1

Identifiers

DOI

10.4161/RNA.18386

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1 December 2017

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