(Q45025350)

8 December 2017

title

Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum (English)

1 reference

8 December 2017

Solanum tuberosum

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jeongwoon Kim

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Xueming Yang

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

David S Douches

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Richard E Veilleux

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

C Robin Buell

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Michael A Hardigan

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Emily Crisovan

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Parker Laimbeer

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Courtney P Leisner

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Norma C Manrique-Carpintero

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Linsey Newton

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Gina M Pham

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Brieanne Vaillancourt

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Zixian Zeng

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jiming Jiang

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

publication date

15 January 2016

1 reference

8 December 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

388-405

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26772996%20AND%20SRC:MED&resulttype=core&format=json

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

11 June 2020

cites work

1 reference

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A copy number variation map of the human genome

27 August 2018

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27 August 2018

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27 August 2018

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27 August 2018

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Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps

27 August 2018

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Copy number polymorphism in plant genomes

27 August 2018

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Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes

27 August 2018

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A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato

27 August 2018

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Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries

27 August 2018

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Copy number variation in potato - an asexually propagated autotetraploid species.

27 August 2018

1 reference

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Aluminum tolerance in maize is associated with higher MATE1 gene copy number

27 August 2018

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Phenotypic impact of genomic structural variation: insights from and for human disease

27 August 2018

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An integrated map of genetic variation from 1,092 human genomes

27 August 2018

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Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean

27 August 2018

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Genome-wide analysis of SAUR gene family in Solanaceae species

27 August 2018

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MicroRNA transcriptomic analysis of heterosis during maize seed germination

27 August 2018

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Maize HapMap2 identifies extant variation from a genome in flux.

27 August 2018

1 reference

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Integration of two diploid potato linkage maps with the potato genome sequence

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum).

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing

27 August 2018

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Replication stress and mechanisms of CNV formation

27 August 2018

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27 August 2018

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Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis

27 August 2018

1 reference

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Whole-genome sequencing of multiple Arabidopsis thaliana populations.

27 August 2018

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Genome sequence and analysis of the tuber crop potato

27 August 2018

1 reference

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The variant call format and VCFtools

27 August 2018

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

27 August 2018

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CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

27 August 2018

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Modulating plant hormones by enzyme action: the GH3 family of acyl acid amido synthetases

27 August 2018

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Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

27 August 2018

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Genome-wide patterns of genetic variation among elite maize inbred lines

27 August 2018

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Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

27 August 2018

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27 August 2018

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Copy number variation shapes genome diversity in Arabidopsis over immediate family generational scales

27 August 2018

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Enzymatic functions of wild tomato methylketone synthases 1 and 2.

27 August 2018

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27 August 2018

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

27 August 2018

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27 August 2018

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Structural variation in the human genome and its role in disease

27 August 2018

1 reference

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Gene amplification confers glyphosate resistance in Amaranthus palmeri.

27 August 2018

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Building the sequence map of the human pan-genome

27 August 2018

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

27 August 2018

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Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication

27 August 2018

1 reference

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The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

27 August 2018

1 reference

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Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.

27 August 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

27 August 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

27 August 2018

1 reference

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Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification

27 August 2018

1 reference

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Intergenic locations of rice centromeric chromatin

27 August 2018

1 reference

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Multiple sequence alignment using ClustalW and ClustalX

27 August 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

27 August 2018

1 reference

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Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice

27 August 2018

1 reference

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Boron-toxicity tolerance in barley arising from efflux transporter amplification

27 August 2018

1 reference

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Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

27 August 2018

1 reference

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Transposable elements and the epigenetic regulation of the genome

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Transposable elements and the plant pan-genomes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

High rate of chimeric gene origination by retroposition in plant genomes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Assessment of linkage disequilibrium in potato genome with single nucleotide polymorphism markers.

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Genome duplication and the origin of angiosperms

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Repbase Update, a database of eukaryotic repetitive elements

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Metabolic, genomic, and biochemical analyses of glandular trichomes from the wild tomato species Lycopersicon hirsutum identify a key enzyme in the biosynthesis of methylketones

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Evolution of DNA sequence nonhomologies among maize inbreds

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

The multi-protein family of Arabidopsis sulphotransferases and their relatives in other plant species

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

The Pfam protein families database

27 August 2018

1 reference

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Intraspecific violation of genetic colinearity and its implications in maize

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Production and quantification of methyl ketones in wild tomato accessions

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Organization of genes controlling disease resistance in the potato genome

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Evolutionary dynamics of plant R-genes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Structure, function and evolution of plant disease resistance genes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Gene ontology: tool for the unification of biology

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Developmental and light regulation of desacetoxyvindoline 4-hydroxylase in catharanthus roseus (L.) G. Don. . Evidence Of a multilevel regulatory mechanism

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Transposable elements as sources of variation in animals and plants

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Sulfation and sulfotransferases 6: Biochemistry and molecular biology of plant sulfotransferases.

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Synteny and Collinearity in Plant Genomes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790865

A graphical representation of genetic and physical maps: The Marey map

1 December 2018

1 reference

12 December 2020

Comparison of single cell culture derived Solanum tuberosum L. plants and a model for their application in breeding programs

1 reference

12 December 2020

CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals

1 reference

12 December 2020

Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa)

1 reference

12 December 2020

Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers

1 reference

12 December 2020

QTL analysis of trichome-mediated insect resistance in potato

1 reference

12 December 2020