(Q45324054)

13 December 2017

Identifying spatio-temporal dynamics of Ebola in Sierra Leone using virus genomes (English)

1 reference

13 December 2017

0 references

Orthoebolavirus zairense

0 references

spatiotemporal dynamics

1 reference

based on heuristic

inferred from title

spatio-temporal dynamics

1 reference

Kyle B Gustafson

1

0 references

author name string

Joshua L Proctor

series ordinal

2

1 reference

13 December 2017

1 November 2017

1 reference

Journal of the Royal Society Interface

13 December 2017

1 reference

13 December 2017

14

1 reference

13 December 2017

136

1 reference

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases

13 December 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Virus genomes reveal factors that spread and sustained the Ebola epidemic

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Key data for outbreak evaluation: building on the Ebola experience

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Spatial and temporal dynamics of superspreading events in the 2014-2015 West Africa Ebola epidemic

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Spatiotemporal Analysis of the 2014 Ebola Epidemic in West Africa

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Spatial spread of the West Africa Ebola epidemic

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Forecasting Epidemiological and Evolutionary Dynamics of Infectious Diseases

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

After Ebola in West Africa — Unpredictable Risks, Preventable Epidemics

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Genomic Signatures of Emerging Viruses: A New Era of Systems Epidemiology

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Transmission network of the 2014-2015 Ebola epidemic in Sierra Leone

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Genotypic anomaly in Ebola virus strains circulating in Magazine Wharf area, Freetown, Sierra Leone, 2015.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Impact of human mobility on the emergence of dengue epidemics in Pakistan

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

A review of epidemiological parameters from Ebola outbreaks to inform early public health decision-making

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Modeling malaria genomics reveals transmission decline and rebound in Senegal

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Social pathways for Ebola virus disease in rural Sierra Leone, and some implications for containment.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Temporal Changes in Ebola Transmission in Sierra Leone and Implications for Control Requirements: a Real-time Modelling Study

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Extracting transmission networks from phylogeographic data for epidemic and endemic diseases: Ebola virus in Sierra Leone, 2009 H1N1 pandemic influenza and polio in Nigeria.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Regional spread of Ebola virus, West Africa, 2014.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Estimating the Reproduction Number of Ebola Virus (EBOV) During the 2014 Outbreak in West Africa

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Early epidemic dynamics of the west african 2014 ebola outbreak: estimates derived with a simple two-parameter model

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Epidemiological and viral genomic sequence analysis of the 2014 ebola outbreak reveals clustered transmission

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Predictive spatial risk model of poliovirus to aid prioritization and hasten eradication in Nigeria

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Phylodynamic inference for structured epidemiological models

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Relating phylogenetic trees to transmission trees of infectious disease outbreaks

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Evaluating the adequacy of gravity models as a description of human mobility for epidemic modelling.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Foraging success of biological Lévy flights recorded in situ

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Bayesian phylogenetics with BEAUti and the BEAST 1.7

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Inference for nonlinear epidemiological models using genealogies and time series

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Multiscale mobility networks and the spatial spreading of infectious diseases

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Superspreading and the effect of individual variation on disease emergence

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Forecast and control of epidemics in a globalized world

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Synchrony, waves, and spatial hierarchies in the spread of influenza.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

Revealing the history of infectious disease epidemics through phylogenetic trees

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5721162

The morphology of the rat vibrissal array: a model for quantifying spatiotemporal patterns of whisker-object contact

15 August 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2017.0583

Investigating the Consequences of Interference between Multiple CD8+ T Cell Escape Mutations in Early HIV Infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2017.0583

Power-Law Distributions in Empirical Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2017.0583

The Large-Sample Distribution of the Likelihood Ratio for Testing Composite Hypotheses

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2017.0583

A new look at the statistical model identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2017.0583

Computing the Local Field Potential (LFP) from Integrate-and-Fire Network Models

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2017.0583

Measles metapopulation dynamics: a gravity model for epidemiological coupling and dynamics

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29187639

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSIF.2017.0583

1 reference

13 December 2017

1 reference

1 reference

13 December 2017

1 reference

PMCID

5721162