(Q45942150)

English

Improving taxonomic accuracy for fungi in public sequence databases: applying 'one name one species' in well-defined genera with Trichoderma/Hypocrea as a test case.

scientific article published in January 2017

In more languages

default values for all languages

No label defined

No description defined

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Improving taxonomic accuracy for fungi in public sequence databases: applying 'one name one species' in well-defined genera with Trichoderma/Hypocrea as a test case. (English)

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Priscila Chaverri-Echandi

3

object named as

Priscila Chaverri

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Conrad Lamoraal Schoch

7

object named as

Conrad L Schoch

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

author name string

Barbara Robbertse

1

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Pooja K Strope

2

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Romina Gazis

4

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Stacy Ciufo

5

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Michael Domrachev

6

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

publication date

1 January 2017

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

2017

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Global food and fibre security threatened by current inefficiencies in fungal identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

A new species of Trichoderma hypoxylon harbours abundant secondary metabolites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Sequence-based classification and identification of Fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Seven wood-inhabiting new species of the genus Trichoderma (Fungi, Ascomycota) in Viride clade

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Biodiversity of Trichoderma (Hypocreaceae) in Southern Europe and Macaronesia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Accepted Trichoderma names in the year 2015.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database--the quality controlled standard tool for routine identification of human and animal pathogenic fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Systematics of the Trichoderma harzianum species complex and the re-identification of commercial biocontrol strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Type material in the NCBI Taxonomy Database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

New combinations in Trichoderma (Hypocreaceae, Hypocreales).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Disentangling the Trichoderma viridescens complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Phylogeny of the clinically relevant species of the emerging fungus Trichoderma and their antifungal susceptibilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Towards a unified paradigm for sequence-based identification of fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) proposed for acceptance or rejection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

European species of Hypocrea part II: species with hyaline ascospores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Trichoderma: the genomics of opportunistic success

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

QIIME allows analysis of high-throughput community sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Comments on the paper by Pleijel et al. (2008): Vouching for GenBank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Hypocrea rufa/Trichoderma viride: a reassessment, and description of five closely related species with and without warted conidia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Systematics of Hypocrea citrina and related taxa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Reconstructing the early evolution of Fungi using a six-gene phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

An oligonucleotide barcode for species identification in Trichoderma and Hypocrea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

24 May 2018

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

15 August 2018

Evolution of habitat preference and nutrition mode in a cosmopolitan fungal genus with evidence of interkingdom host jumps and major shifts in ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

15 August 2018

ITS1 versus ITS2 as DNA metabarcodes for fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5641268

15 August 2018

TrichoBLAST: a multilocus database for Trichoderma and Hypocrea identifications

1 reference

https://pubmed.ncbi.nlm.nih.gov/29220466

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An appraisal of megascience platforms for biodiversity information

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.3897/MYCOKEYS.5.4302

Identifiers

10.1093/DATABASE/BAX072

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

DBLP publication ID

journals/biodb/RobbertseSCGCDS17

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 December 2017

http://europepmc.org/abstract/PMC/5641268

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q45942150&oldid=1650080681"