(Q46094386)

18 June 2018

title

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation (English)

1 reference

18 June 2018

single cell transcriptomics

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

12

Sara Mostafavi

1 reference

18 June 2018

14

Noah Zaitlen

1 reference

18 June 2018

Lindsey A. Criswell

15

object named as

Lindsey A Criswell

1 reference

18 June 2018

author name string

Hyun Min Kang

1

1 reference

18 June 2018

Meena Subramaniam

2

1 reference

18 June 2018

Sasha Targ

3

1 reference

18 June 2018

Michelle Nguyen

4

1 reference

18 June 2018

Lenka Maliskova

5

1 reference

18 June 2018

Elizabeth McCarthy

6

1 reference

18 June 2018

Eunice Wan

7

1 reference

18 June 2018

Simon Wong

8

1 reference

18 June 2018

Lauren Byrnes

9

1 reference

18 June 2018

Cristina M Lanata

10

1 reference

18 June 2018

Rachel E Gate

11

1 reference

18 June 2018

Alexander Marson

13

1 reference

18 June 2018

Chun Jimmie Ye

16

1 reference

18 June 2018

publication date

11 December 2017

1 reference

18 June 2018

external data available at URL

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE96583

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

18 June 2018

volume

36

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18 June 2018

issue

1

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18 June 2018

page(s)

89-94

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18 June 2018

describes a project that uses

blood

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

10x Genomics Chromium

1 reference

A curated database reveals trends in single-cell transcriptomics

https://scigraph.springernature.com/pub.10.1038/nbt.4042

7 February 2021

exact match

0 references

cites work

Comparative Analysis of Single-Cell RNA Sequencing Methods.

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Scaling single-cell genomics from phenomenology to mechanism

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Pooled CRISPR screening with single-cell transcriptome readout

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Massively parallel digital transcriptional profiling of single cells

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Batch effects and the effective design of single-cell gene expression studies

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq

18 June 2018

1 reference

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A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response

18 June 2018

1 reference

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Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Single-cell barcoding and sequencing using droplet microfluidics

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Differential Effects of Environmental and Genetic Factors on T and B Cell Immune Traits

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

A Functional Genomics Approach to Understand Variation in Cytokine Production in Humans.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

A Single-Cell Transcriptome Atlas of the Human Pancreas

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Fast and accurate long-range phasing in a UK Biobank cohort

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Parsing the Interferon Transcriptional Network and Its Disease Associations

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Single-cell genome sequencing: current state of the science

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

A global reference for human genetic variation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Single-cell chromatin accessibility reveals principles of regulatory variation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Spatial reconstruction of single-cell gene expression data

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Computational and analytical challenges in single-cell transcriptomics

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Variation in the human immune system is largely driven by non-heritable influences

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Genetic and epigenetic fine mapping of causal autoimmune disease variants

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Intersection of population variation and autoimmunity genetics in human T cell activation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Microfluidic single-cell whole-transcriptome sequencing

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Common genetic variants modulate pathogen-sensing responses in human dendritic cells

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Full-length RNA-seq from single cells using Smart-seq2.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Genetic variants regulating immune cell levels in health and disease.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Transcriptome and genome sequencing uncovers functional variation in humans

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Integrative genomic analysis of the human immune response to influenza vaccination

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

STAR: ultrafast universal RNA-seq aligner

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

The variant call format and VCFtools

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Differential expression analysis for sequence count data

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

The Sequence Alignment/Map format and SAMtools

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Cell-type specific gene expression profiles of leukocytes in human peripheral blood

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

Concerted peptide trimming by human ERAP1 and ERAP2 aminopeptidase complexes in the endoplasmic reticulum.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5784859

How cells respond to interferons

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.4042

21 January 2018

Identifiers

DOI

10.1038/NBT.4042

1 reference

18 June 2018

Dimensions Publication ID

0 references

1 reference

18 June 2018

PubMed publication ID

29227470

1 reference

18 June 2018