(Q46223387)

20 December 2017

title

Cohesin Loss Eliminates All Loop Domains (English)

1 reference

20 December 2017

21

Eric S Lander

1 reference

20 December 2017

22

Erez Lieberman Aiden

1 reference

20 December 2017

Bradley Bernstein

19

Bradley E Bernstein

1 reference

20 December 2017

Jesse Engreitz

4

Jesse M Engreitz

1 reference

20 December 2017

Kyong-Rim Kieffer-Kwon

6

Kyong-Rim Kieffer-Kwon

1 reference

20 December 2017

Suhas S.P. Rao

1

Suhas S P Rao

1 reference

20 December 2017

Brian Glenn St. Hilaire

3

Brian Glenn St Hilaire

1 reference

20 December 2017

Tamar Schlick

18

Tamar Schlick

1 reference

20 December 2017

Douglass Turner

14

Douglass Turner

1 reference

20 December 2017

Adrian L Sanborn

7

Adrian L Sanborn

1 reference

20 December 2017

author name string

Su-Chen Huang

2

1 reference

20 December 2017

Elizabeth M Perez

5

1 reference

20 December 2017

Sarah E Johnstone

8

1 reference

20 December 2017

Gavin D Bascom

9

1 reference

20 December 2017

Ivan D Bochkov

10

1 reference

20 December 2017

Xingfan Huang

11

1 reference

20 December 2017

Muhammad S Shamim

12

1 reference

20 December 2017

Jaeweon Shin

13

1 reference

20 December 2017

Ziyi Ye

15

1 reference

20 December 2017

Arina D Omer

16

1 reference

20 December 2017

James T Robinson

17

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20 December 2017

Rafael Casellas

20

1 reference

20 December 2017

language of work or name

English

0 references

publication date

1 October 2017

1 reference

20 December 2017

published in

Cell

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20 December 2017

volume

171

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20 December 2017

issue

2

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20 December 2017

page(s)

305-320.e24

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20 December 2017

describes a project that uses

scikit-image

1 reference

8 June 2022

https://europepmc.org/search?query=(METHODS:'scikit-image')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Phase separation drives heterochromatin domain formation

29 September 2018

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Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

29 September 2018

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The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension

29 September 2018

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29 September 2018

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Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion

29 September 2018

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29 September 2018

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Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus.

29 September 2018

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Linking Chromatin Fibers to Gene Folding by Hierarchical Looping

29 September 2018

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Rapid movement and transcriptional re-localization of human cohesin on DNA

29 September 2018

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Local regulation of gene expression by lncRNA promoters, transcription and splicing.

29 September 2018

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Transferable model for chromosome architecture

29 September 2018

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Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

29 September 2018

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Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

29 September 2018

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Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture

29 September 2018

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Formation of Chromosomal Domains by Loop Extrusion.

29 September 2018

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Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Rapid Protein Depletion in Human Cells by Auxin-Inducible Degron Tagging with Short Homology Donors.

29 September 2018

1 reference

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Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments.

29 September 2018

1 reference

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Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes

29 September 2018

1 reference

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Insulator dysfunction and oncogene activation in IDH mutant gliomas

29 September 2018

1 reference

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CTCF Binding Polarity Determines Chromatin Looping.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Getting up to speed with transcription elongation by RNA polymerase II

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains.

29 September 2018

1 reference

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Use model-based Analysis of ChIP-Seq (MACS) to analyze short reads generated by sequencing protein-DNA interactions in embryonic stem cells

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Cohesin-mediated interactions organize chromosomal domain architecture

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Super-enhancers in the control of cell identity and disease

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Self-organization of domain structures by DNA-loop-extruding enzymes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

An integrated encyclopedia of DNA elements in the human genome

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Spatial partitioning of the regulatory landscape of the X-inactivation centre

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Topological domains in mammalian genomes identified by analysis of chromatin interactions

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Fast gapped-read alignment with Bowtie 2

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Identifying dispersed epigenomic domains from ChIP-Seq data

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Mediator and cohesin connect gene expression and chromatin architecture

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Fast and accurate long-read alignment with Burrows-Wheeler transform

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Cohesin mediates transcriptional insulation by CCCTC-binding factor

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5846482

10.1016/J.CELL.2017.09.026

29 September 2018

Identifiers

DOI

1 reference

20 December 2017

0 references

1 reference

20 December 2017