(Q46228838)

English

Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication

scientific article published on 25 November 2008

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scholarly article

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Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication (English)

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Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

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based on heuristic

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Qian Qian

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PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

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object named as

Dali Zeng

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20 December 2017

http://europepmc.org/abstract/MED/19033526

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Suhua Shi

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20 December 2017

http://europepmc.org/abstract/MED/19033526

author name string

Yanchun Yu

1

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Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

Tian Tang

2

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20 December 2017

http://europepmc.org/abstract/MED/19033526

Yonghong Wang

4

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20 December 2017

http://europepmc.org/abstract/MED/19033526

Meixian Yan

5

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Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

Bin Han

7

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20 December 2017

http://europepmc.org/abstract/MED/19033526

Chung-I Wu

8

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20 December 2017

http://europepmc.org/abstract/MED/19033526

Jiayang Li

10

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20 December 2017

http://europepmc.org/abstract/MED/19033526

publication date

25 November 2008

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Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

20

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

11

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Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

2946-2959

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

Molecular cloning and characterization of apricot fruit polyphenol oxidase

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation and selection at the CAULIFLOWER floral homeotic gene accompanying the evolution of domesticated Brassica oleracea

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hitchhiking under positive Darwinian selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyphenol oxidase from hybrid poplar. Cloning and expression in response to wounding and herbivory.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TCS: a computer program to estimate gene genealogies

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombination and the frequency spectrum in Drosophila melanogaster and Drosophila simulans.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular cloning and characterisation of banana fruit polyphenol oxidase.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An integrated physical and genetic map of the rice genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Green revolution: a mutant gibberellin-synthesis gene in rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Overexpression of polyphenol oxidase in transgenic tomato plants results in enhanced bacterial disease resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential Expression and Turnover of the Tomato Polyphenol Oxidase Gene Family during Vegetative and Reproductive Development

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative sequencing in the genus Lycopersicon. Implications for the evolution of fruit size in the domestication of cultivated tomatoes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic mapping of polyphenol oxidase in tetraploid wheat.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evidence on the origin and evolution of glutinous rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence and analysis of rice chromosome 4.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular characterization of wheat polyphenol oxidase (PPO).

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of tillering in rice.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning and characterization of cDNAs coding for Vicia faba polyphenol oxidase

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

"V-FACTOR" OF STREPTOMYCES ORIGIN, AN EFFECTIVE SUBSTANCE FOR THE CONTROL OF THE BACTERIAL LEAF BLIGHT OF RICE PLANT

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pattern of diversity in the genomic region near the maize domestication gene tb1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa).

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene duplication and speciation in Drosophila: evidence from the Odysseus locus

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Population history and natural selection shape patterns of genetic variation in 132 genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mimicking cellular sorting improves prediction of subcellular localization

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phenotypic selection for dormancy introduced a set of adaptive haplotypes from weedy into cultivated rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origin of the naked grains of maize

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rice domestication by reducing shattering

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broad bean leaf polyphenol oxidase is a 60-kilodalton protein susceptible to proteolytic cleavage.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptation and speciation: what can F(st) tell us?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Statistical tests for detecting positive selection by utilizing high-frequency variants

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An expression atlas of rice mRNAs and small RNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Compound tests for the detection of hitchhiking under positive selection.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Clustal W and Clustal X version 2.0

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide patterns of nucleotide polymorphism in domesticated rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein targeting towards the thylakoid lumen of chloroplasts: proper localization of fusion proteins is only observed in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mapping of rice chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transport and routing of proteins into chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple sequence alignment with hierarchical clustering

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comprehensive set of sequence analysis programs for the VAX

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary relationship of DNA sequences in finite populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple method for displaying the hydropathic character of a protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyphenol oxidase in potato. A multigene family that exhibits differential expression patterns

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enzymatic browning reactions in apple and apple products

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of a plant catechol oxidase containing a dicopper center

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

When less is more: gene loss as an engine of evolutionary change

1 reference

https://pubmed.ncbi.nlm.nih.gov/19033526

12 December 2020

based on heuristic

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Identifiers

10.1105/TPC.108.060426

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

20 December 2017

http://europepmc.org/abstract/MED/19033526

ResearchGate publication ID

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