(Q46338294)

21 December 2017

title

Computer simulation studies of the fidelity of DNA polymerases (English)

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21 December 2017

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3

Arieh Warshel

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21 December 2017

Jan Florián

1

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21 December 2017

Myron F Goodman

series ordinal

2

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21 December 2017

publication date

1 March 2003

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21 December 2017

published in

Biopolymers

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21 December 2017

volume

68

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21 December 2017

issue

3

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21 December 2017

page(s)

286-299

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21 December 2017

A model of prebiotic replication: survival of the fittest versus extinction of the unfittest

cites work

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Consistent Force Field for Calculations of Conformations, Vibrational Spectra, and Enthalpies of Cycloalkane and n‐Alkane Molecules

21 January 2018

1 reference

Comparison between DNA melting thermodynamics and DNA polymerase fidelity

21 January 2018

1 reference

Fidelity of DNA synthesis

21 January 2018

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Fidelity mechanisms in DNA replication

21 January 2018

1 reference

An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics

21 January 2018

1 reference

Hydrogen bonding, base stacking, and steric effects in dna replication

21 January 2018

1 reference

An open and closed case for all polymerases.

21 January 2018

1 reference

DNA polymerases: structural diversity and common mechanisms

21 January 2018

1 reference

Calculations of antibody-antigen interactions: microscopic and semi-microscopic evaluation of the free energies of binding of phosphorylcholine analogs to McPC603

21 January 2018

1 reference

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

21 January 2018

1 reference

A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques

21 January 2018

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Thermodynamics of nucleic acids and their interactions with ligands

21 January 2018

1 reference

Ab initio conformational analysis of nucleic acid components: intrinsic energetic contributions to nucleic acid structure and dynamics

21 January 2018

1 reference

A quantum-dynamics study of the prototropic tautomerism of guanine and its contribution to spontaneous point mutations in Escherichia coli

21 January 2018

1 reference

Varied Molecular Interactions at the Active Sites of Several DNA Polymerases: Nonpolar Nucleoside Isosteres as Probes

21 January 2018

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Enzyme-DNA interactions required for efficient nucleotide incorporation and discrimination in human DNA polymerase beta.

21 January 2018

1 reference

A view at the millennium: the efficiency of enzymatic catalysis

21 January 2018

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Role of the C-terminal residue of the DNA polymerase of bacteriophage T7.

21 January 2018

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Conformational coupling in DNA polymerase fidelity

21 January 2018

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Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

21 January 2018

1 reference

How Well Does Microsolvation Represent Macrosolvation? A Test Case: Dynamics of Decarboxylation of 4-Pyridylacetic Acid Zwitterion

21 January 2018

1 reference

Proton Transfer in the Adenine-Thymine Base Pair

21 January 2018

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Structures and Energies of Hydrogen-Bonded DNA Base Pairs. A Nonempirical Study with Inclusion of Electron Correlation

21 January 2018

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The mechanism of action of T7 DNA polymerase

21 January 2018

1 reference

A new method for predicting binding affinity in computer-aided drug design

21 January 2018

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Ligand binding affinity prediction by linear interaction energy methods

21 January 2018

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Simulation of enzyme reactions using valence bond force fields and other hybrid quantum/classical approaches

21 January 2018

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Improved nearest-neighbor parameters for predicting DNA duplex stability

21 January 2018

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Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices

21 January 2018

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Computational studies on nucleic acid building blocks

21 January 2018

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The fidelity of DNA polymerase beta during distributive and processive DNA synthesis

21 January 2018

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

21 January 2018

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Ribozyme-catalyzed and nonenzymatic reactions of phosphate diesters: rate effects upon substitution of sulfur for a nonbridging phosphoryl oxygen atom

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Dynamics of biochemical and biophysical reactions: insight from computer simulations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Unambiguous determination of the stereochemistry of nucleotidyl transfer catalyzed by DNA polymerase I from Escherichia coli

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Estimation of binding free energies for HIV proteinase inhibitors by molecular dynamics simulations.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Elementary steps in the DNA polymerase I reaction pathway

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

On the mechanism of guanosine triphosphate hydrolysis in ras p21 proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Polymerase structures and mechanism.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

A unified polymerase mechanism for nonhomologous DNA and RNA polymerases

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Performance of empirical potentials (AMBER, CFF95, CVFF, CHARMM, OPLS, POLTEV), semiempirical quantum chemical methods (AM1, MNDO/M, PM3), andab initio Hartree-Fock method for interaction of DNA bases: Comparison with nonempirical beyond Hartree-Fock

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

DNA base modification: ionized base pairs and mutagenesis

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/BIP.10244

Identifiers

DOI

10.1002/BIP.10244

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21 December 2017

release_4u766oczordsljqa5m4adwoimq

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/4u766oczordsljqa5m4adwoimq

mapped directly with Wikidata item

24 November 2022

based on heuristic

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21 December 2017