(Q46638826)

23 December 2017

title

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates (English)

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23 December 2017

main subject

Evolutionary dynamics

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Andan Zhu

1

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23 December 2017

Wenhu Guo

2

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23 December 2017

Sakshi Gupta

3

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23 December 2017

Weishu Fan

4

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23 December 2017

Jeffrey P Mower

5

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23 December 2017

language of work or name

English

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publication date

17 November 2015

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23 December 2017

published in

New Phytologist

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23 December 2017

volume

209

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23 December 2017

issue

4

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23 December 2017

page(s)

1747-1756

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23 December 2017

Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants

cites work

1 reference

The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

21 January 2018

1 reference

Whole-gene positive selection, elevated synonymous substitution rates, duplication, and indel evolution of the chloroplast clpP1 gene

21 January 2018

1 reference

Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes

21 January 2018

1 reference

Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions

21 January 2018

1 reference

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage

21 January 2018

1 reference

Predominant and substoichiometric isomers of the plastid genome coexist within Juniperus plants and have shifted multiple times during cupressophyte evolution

21 January 2018

1 reference

Two distinct plastid genome configurations and unprecedented intraspecies length variation in the accD coding region in Medicago truncatula

21 January 2018

1 reference

Complete chloroplast DNA sequence from a Korean endemic genus, Megaleranthis saniculifolia, and its evolutionary implications

21 January 2018

1 reference

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21 January 2018

1 reference

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21 January 2018

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21 January 2018

1 reference

Localized hypermutation and associated gene losses in legume chloroplast genomes

21 January 2018

1 reference

Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing

21 January 2018

1 reference

Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.

21 January 2018

1 reference

Nucleotide Substitution Rates in Legume Chloroplast DNA Depend on the Presence of the Inverted Repeat

21 January 2018

1 reference

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

21 January 2018

1 reference

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

21 January 2018

1 reference

Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene.

21 January 2018

1 reference

Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae

21 January 2018

1 reference

Complete plastid genome sequencing of Trochodendraceae reveals a significant expansion of the inverted repeat and suggests a Paleogene divergence between the two extant species

21 January 2018

1 reference

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

21 January 2018

1 reference

KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies

21 January 2018

1 reference

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

21 January 2018

1 reference

Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae

21 January 2018

1 reference

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

21 January 2018

1 reference

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

21 January 2018

1 reference

Evolutionary Stasis in Cycad Plastomes and the First Case of Plastome GC-Biased Gene Conversion

21 January 2018

1 reference

Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy.

21 January 2018

1 reference

Comparative chloroplast genomes of pinaceae: insights into the mechanism of diversified genomic organizations

21 January 2018

1 reference

Automatic annotation of organellar genomes with DOGMA

21 January 2018

1 reference

Pattern and rate of indel evolution inferred from whole chloroplast intergenic regions in sugarcane, maize and rice.

21 January 2018

1 reference

Complete chloroplast genome sequences of important oilseed crop Sesamum indicum L

21 January 2018

1 reference

The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); comparative evolutionary analyses with other three asterids

21 January 2018

1 reference

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

Unprecedented heterogeneity in the synonymous substitution rate within a plant genome

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1111/NPH.13743

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23 December 2017

PubMed ID

26574731

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23 December 2017