(Q53050979)

10 May 2018

title

Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy. (English)

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10 May 2018

author name string

Chung-Shien Wu

1

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10 May 2018

Yu-Ting Lai

2

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10 May 2018

Ching-Ping Lin

3

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10 May 2018

Ya-Nan Wang

4

1 reference

10 May 2018

Shu-Miaw Chaw

5

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10 May 2018

publication date

7 January 2009

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10 May 2018

Molecular Phylogenetics and Evolution

number of pages

10

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based on heuristic

inferred from page(s)

published in

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10 May 2018

volume

52

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10 May 2018

page(s)

115-124

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10 May 2018

issue

1

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10 May 2018

Reductive evolution of resident genomes.

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Why are plastid genomes retained in non-photosynthetic organisms?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Distribution of chromosome length variation in natural isolates of Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Growth rate-optimised tRNA abundance and codon usage.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Photosynthetic evolution in parasitic plants: insight from the chloroplast genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Selection for short introns in highly expressed genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

What controls the length of noncoding DNA?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Why genes persist in organelle genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

A phylogeny of the flowering plant family Apiaceae based on chloroplast DNA rpl16 and rpoC1 intron sequences: towards a suprageneric classification of subfamily Apioideae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Seed plant phylogeny and the origin of angiosperms: An experimental cladistic approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Accelerated evolution associated with genome reduction in a free-living prokaryote

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Growth rate dependence of transfer RNA abundance in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Xylem hydraulic and photosynthetic function of Gnetum (Gnetales) species from Papua New Guinea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

The evolution of double fertilization and endosperm: an ”historical" perspective

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Genome structure and gene content in protist mitochondrial DNAs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Insertion-deletion biases and the evolution of genome size

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Seed plant phylogeny: gnetophytes are derived conifers and a sister group to Pinaceae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Estimation of the age of extant Ephedra using chloroplast rbcL sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Phylogenetic Relationships in Ephedra (Gnetales): Evidence from Nuclear and Chloroplast DNA Sequence Data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Group II introns: elaborate ribozymes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Group II introns as phylogenetic tools: structure, function, and evolutionary constraints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Growth-optimizing accuracy of gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Nuclear DNA C-values Complete Familial Representation in Gymnosperms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Editing of transfer RNAs in Acanthamoeba castellanii mitochondria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

The minimal cell genome: "on being the right size"

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Gene transfer to the nucleus and the evolution of chloroplasts.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Comparative and functional anatomy of group II catalytic introns--a review

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Is there a unique ribosome phenotype for naturally occurring Escherichia coli?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Deletional bias and the evolution of bacterial genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Genomics and evolution of heritable bacterial symbionts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Mulan: multiple-sequence local alignment and visualization for studying function and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Contrasting modes and tempos of genome evolution in land plant organelles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Why have organelles retained genomes?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Base composition bias might result from competition for metabolic resources.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

DnaSP, DNA polymorphism analyses by the coalescent and other methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Reducing the genome size of organelles favours gene transfer to the nucleus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

RNA editing in plant organelles: machinery, physiological function and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Genome Compaction and Stability in Microsporidian Intracellular Parasites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Compact genes are highly expressed in the moss Physcomitrella patens

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Evolution of prokaryotic gene order: genome rearrangements in closely related species.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

50 Million Years of Genomic Stasis in Endosymbiotic Bacteria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Reductive genome evolution in Buchnera aphidicola

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Welwitschia mirabilis: CAM or not CAM — what is the answer?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

A new Permian gnetalean cone as fossil evidence for supporting current molecular phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Genome size and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Automatic annotation of organellar genomes with DOGMA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

Animal mitochondrial DNA: an extreme example of genetic economy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

inferred from DOI database lookup

7 January 2021

based on heuristic

Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2008.12.026

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/J.YMPEV.2008.12.026

1 reference

10 May 2018

PubMed ID

19166950

1 reference

10 May 2018