(Q46824407)

25 December 2017

title

The same or not the same: lineage-specific gene expansions and homology relationships in multigene families in nematodes (English)

1 reference

25 December 2017

author

Gabriel V. Markov

series ordinal

1

1 reference

25 December 2017

Praveen Baskaran

object named as

Praveen Baskaran

series ordinal

2

0 references

author name string

Ralf J Sommer

series ordinal

3

1 reference

25 December 2017

publication date

17 October 2014

1 reference

25 December 2017

Journal of Molecular Evolution

published in

1 reference

25 December 2017

volume

80

1 reference

25 December 2017

issue

1

1 reference

25 December 2017

page(s)

18-36

1 reference

25 December 2017

https://scigraph.springernature.com/pub.10.1007/s00239-014-9651-y

exact match

0 references

cites work

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

ProtTest: selection of best-fit models of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Comparative analysis of the UDP-glycosyltransferase multigene family in insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

A new look at the statistical model identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Family size evolution in Drosophila chemosensory gene families: a comparative analysis with a critical appraisal of methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

X-ray structures of Na-GST-1 and Na-GST-2 two glutathione s-transferase from the human hookworm Necator americanus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Life span and stress resistance of Caenorhabditis elegans are differentially affected by glutathione transferases metabolizing 4-hydroxynon-2-enal

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Gene amplification and insecticide resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Nematodes: the worm and its relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

A molecular evolutionary framework for the phylum Nematoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Complex small-molecule architectures regulate phenotypic plasticity in a nematode

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Cytochromes P450: a structure-based summary of biotransformations using representative substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Genome sequence of the nematode C. elegans: a platform for investigating biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The life and death of gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Toward community standards in the quest for orthologs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Identification and characterization of a family of Caenorhabditis elegans genes that is homologous to the cadmium-responsive gene cdr-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Accelerated Profile HMM Searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Molecular evolution and functional diversification of fatty acid desaturases after recurrent gene duplication in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Distinguishing Homologous from Analogous Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Functional and evolutionary implications of gene orthology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Draft genome of the filarial nematode parasite Brugia malayi

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Gene family evolution across 12 Drosophila genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Crystal structure of a soluble form of the intracellular chloride ion channel CLIC1 (NCC27) at 1.4-A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The nematode Pristionchus pacificus (Nematoda: Diplogastridae) is associated with the oriental beetle Exomala orientalis (Coleoptera: Scarabaeidae) in Japan

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Ascaris suum draft genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Medium- and short-chain dehydrogenase/reductase gene and protein families : the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Recruitment of a hedgehog regulatory circuit in butterfly eyespot evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Bioinformatic and biochemical characterization of DCXR and DHRS2/4 from Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Orthologs, paralogs, and evolutionary genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Parallel evolutionary pathways for glutathione transferases: structure and mechanism of the mitochondrial class kappa enzyme rGSTK1-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Phylogenetic mixture models for proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Cytochrome P450 and actin genes expressed in Helicoverpa zea and Helicoverpa armigera: paralogy/orthology identification, gene conversion and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

BadiRate: estimating family turnover rates by likelihood-based methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Xenobiotic detoxification in the nematode Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Comparison of vertebrate and invertebrate CLIC proteins: the crystal structures of Caenorhabditis elegans EXC-4 and Drosophila melanogaster DmCLIC

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Molecular evolution of glutathione S-transferases in the genus Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The repatterning of eukaryotic genomes by random genetic drift

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The evolution of novelty in conserved gene families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Independent elaboration of steroid hormone signaling pathways in metazoans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Cytochrome P450s and short-chain dehydrogenases mediate the toxicogenomic response of PCB52 in the nematode Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The draft genome of the parasitic nematode Trichinella spiralis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The role of cytochrome b5 fusion desaturases in the synthesis of polyunsaturated fatty acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Conserved features and evolutionary shifts of the EDA signaling pathway involved in vertebrate skin appendage development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

GUIDANCE: a web server for assessing alignment confidence scores.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Heme transport and detoxification in nematodes: subproteomics evidence of differential role of glutathione transferases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Structure of the major cytosolic glutathione S-transferase from the parasitic nematode Onchocerca volvulus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The evolution of signalling pathways in animal development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Molecular evolution of the major chemosensory gene families in insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Structure, function and evolution of glutathione transferases: implications for classification of non-mammalian members of an ancient enzyme superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The ABC transporter gene family of Caenorhabditis elegans has implications for the evolutionary dynamics of multidrug resistance in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Divergent gene expression in the conserved dauer stage of the nematodes Pristionchus pacificus and Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

A dominant role for extracellular glutathione S-transferase from Onchocerca volvulus is the production of prostaglandin D2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

DHS-21, a dicarbonyl/L-xylulose reductase (DCXR) ortholog, regulates longevity and reproduction in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Role of ABC transporters in lipid transport and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

A genomic perspective on protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Identification and characterization of a sphingolipid delta 4-desaturase family

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Gene family evolution and homology: genomics meets phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The evolutionary significance of ancient genome duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Binding of hematin by a new class of glutathione transferase from the blood-feeding parasitic nematode Haemonchus contortus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Comparative metabolomics reveals biogenesis of ascarosides, a modular library of small-molecule signals in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

The developmental genetics of homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Fat synthesis and adiposity regulation in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Statistical methods for detecting molecular adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

WormBase 2012: more genomes, more data, new website

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Comparative genomics and adaptive selection of the ATP-binding-cassette gene family in caenorhabditis species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Conservation and diversification of Wnt signaling function during the evolution of nematode vulva development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-014-9651-Y

Modeling amino acid replacement

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25323991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Metazoan cytochrome P450 evolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25323991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25323991

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00239-014-9651-Y

1 reference

25 December 2017

1 reference

25 December 2017