(Q47160538)

English

Expanded Taxonomic Sampling Coupled with Gene Genealogy Interrogation Provides Unambiguous Resolution for the Evolutionary Root of Angiosperms.

scientific article published on 27 November 2017

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scholarly article

1 reference

Europe PubMed Central

10 January 2018

http://europepmc.org/abstract/PMC/5710718

Expanded Taxonomic Sampling Coupled with Gene Genealogy Interrogation Provides Unambiguous Resolution for the Evolutionary Root of Angiosperms (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

0 references

author name string

Bojian Zhong

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

Ricardo Betancur-R

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

publication date

27 November 2017

1 reference

Europe PubMed Central

10 January 2018

http://europepmc.org/abstract/PMC/5710718

Genome Biology and Evolution

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

9

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

11

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

3154-3161

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Coalescence vs. concatenation: Sophisticated analyses vs. first principles applied to rooting the angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

1 reference

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23 May 2018

Phylotranscriptomic analysis of the origin and early diversification of land plants

1 reference

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23 May 2018

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

ASTRAL: genome-scale coalescent-based species tree estimation

1 reference

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23 May 2018

Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies

1 reference

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23 May 2018

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

1 reference

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23 May 2018

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

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23 May 2018

Another look at the root of the angiosperms reveals a familiar tale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

A functional phylogenomic view of the seed plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Angiosperm phylogeny: 17 genes, 640 taxa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

1 reference

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23 May 2018

Bayesian inference of species trees from multilocus data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Rosid radiation and the rapid rise of angiosperm-dominated forests

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Calculating bootstrap probabilities of phylogeny using multilocus sequence data

1 reference

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23 May 2018

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Inconsistency of phylogenetic estimates from concatenated data under coalescence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

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23 May 2018

Missing data, incomplete taxa, and phylogenetic accuracy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

An approximately unbiased test of phylogenetic tree selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

CONSEL: for assessing the confidence of phylogenetic tree selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

23 May 2018

Contentious relationships in phylogenomic studies can be driven by a handful of genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

15 August 2018

Phylogenomics: Constrained gene tree inference.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

15 August 2018

Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life.

1 reference

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1 reference

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15 August 2018

On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods

1 reference

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ExaBayes: massively parallel bayesian tree inference for the whole-genome era.

1 reference

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15 August 2018

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1 reference

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1 reference

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Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

15 August 2018

The evolutionary root of flowering plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

15 August 2018

Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny.

1 reference

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15 August 2018

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

1 reference

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15 August 2018

Estimating species phylogenies using coalescence times among sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5710718

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STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

1 reference

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BEST: Bayesian estimation of species trees under the coalescent model.

1 reference

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15 August 2018

Identifiers

10.1093/GBE/EVX233

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC5710718&resulttype=core&format=json

9 May 2020

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