(Q47316998)

13 January 2018

title

The evolutionary root of flowering plants (English)

1 reference

13 January 2018

Patrick J Biggs

3

0 references

Bojian Zhong

object named as

Bojian Zhong

4

0 references

Trish McLenachan

9

object named as

Patricia A McLenachan

1 reference

13 January 2018

Peter Lockhart

10

object named as

Peter J Lockhart

1 reference

13 January 2018

author name string

Vadim V Goremykin

1

1 reference

13 January 2018

Svetlana V Nikiforova

2

1 reference

13 January 2018

Peter Delange

5

1 reference

13 January 2018

William Martin

6

1 reference

13 January 2018

Stefan Woetzel

7

1 reference

13 January 2018

Robin A Atherton

8

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13 January 2018

publication date

31 July 2012

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13 January 2018

published in

Systematic Biology

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13 January 2018

volume

62

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13 January 2018

issue

1

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13 January 2018

page(s)

50-61

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13 January 2018

Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences.

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1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Covarion structure in plastid genome evolution: a new statistical test

21 January 2018

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Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

21 January 2018

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Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny.

21 January 2018

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Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Topological bias and inconsistency of maximum likelihood using wrong models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Neighbor-net: an agglomerative method for the construction of phylogenetic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Analysis of Acorus calamus chloroplast genome and its phylogenetic implications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Automated removal of noisy data in phylogenomic analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes: influence of excluding poorly alignable sites from analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Application of phylogenetic networks in evolutionary studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Ancestral polyploidy in seed plants and angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Sequence of Prochloron didemni atpBE and the inference of chloroplast origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Heterotachy and tree building: a case study with plastids and eubacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

The root of the tree of life in the light of the covarion model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

The Root of Angiosperm Phylogeny Inferred from Duplicate Phytochrome Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Resolving difficult phylogenetic questions: why more sequences are not enough

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Identifying and removing fast-evolving sites using compatibility analysis: an example from the Arthropoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

The problem of rooting rapid radiations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Angiosperm phylogeny: 17 genes, 640 taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Amborella not a "basal angiosperm"? Not so fast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

A eudicot from the Early Cretaceous of China

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Modeling the covarion hypothesis of nucleotide substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Deciphering ancient rapid radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

The root of the angiosperms revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Systematic error in seed plant phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS070

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYS070

1 reference

13 January 2018

PubMed ID

22851550

1 reference

13 January 2018