(Q47236897)

12 January 2018

title

The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis (English)

1 reference

12 January 2018

1 reference

Gustavo Caetano-Anollés

series ordinal

1

object named as

Gustavo Caetano-Anollés

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12 January 2018

author name string

Kyung Mo Kim

series ordinal

2

1 reference

12 January 2018

Derek Caetano-Anollés

series ordinal

3

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12 January 2018

publication date

1 January 2012

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12 January 2018

Journal of Molecular Evolution

published in

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12 January 2018

volume

74

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12 January 2018

issue

1-2

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12 January 2018

page(s)

1-34

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12 January 2018

https://scigraph.springernature.com/pub.10.1007/s00239-011-9480-1

exact match

0 references

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The origin and early evolution of membrane channels

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Helical membrane protein folding, stability, and evolution

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Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions

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Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin

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Helix insertion into bilayers and the evolution of membrane proteins

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Aminoacyl-tRNA synthetases: potential markers of genetic code development

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Two classes of tRNA synthetases suggested by sterically compatible dockings on tRNA acceptor stem

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The structural basis of ribozyme-catalyzed RNA assembly

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Peptides and the origin of life

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The first steps of chemical evolution towards the origin of life

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Two types of aminoacyl-tRNA synthetases could be originally encoded by complementary strands of the same nucleic acid

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On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases

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One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation

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Recent mechanistic insights into eukaryotic ribosomes

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Tracing pathways of transport protein evolution

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The Transporter Classification Database: recent advances

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Selection and evolution of enzymes from a partially randomized non-catalytic scaffold

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A synthetic peptide ligase

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Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code

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The origin and evolution of tRNA inferred from phylogenetic analysis of structure

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1 reference

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A 'periodic table' for protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Evolutionary transitions in protein fold space

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Small-molecule metabolism: an enzyme mosaic

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Functional convergence of two lysyl-tRNA synthetases with unrelated topologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A vacuolar v-t-SNARE complex, the predominant form in vivo and on isolated vacuoles, is disassembled and activated for docking and fusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

AAA proteins. Lords of the ring

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Molecular self-assembly of surfactant-like peptides to form nanotubes and nanovesicles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The structure and mechanism of the Mycobacterium tuberculosis cyclodityrosine synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Binding and disruption of phospholipid bilayers by supramolecular RNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The crystal structure of E. coli pantothenate synthetase confirms it as a member of the cytidylyltransferase superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

A novel main-chain anion-binding site in proteins: the nest. A particular combination of phi,psi values in successive residues gives rise to anion-binding sites that occur commonly and are found often at functionally important regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Substrate-assisted catalysis of peptide bond formation by the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

AAA+ ATPases: achieving diversity of function with conserved machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Transmembrane helices before, during, and after insertion

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

tRNA Creation by Hairpin Duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Phylogeny determined by protein domain content

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

RecA-like motor ATPases--lessons from structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

On the origin and highly likely completeness of single-domain protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Structures of the ribosome in intermediate states of ratcheting

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

Conformational Switches Modulate Protein Interactions in Peptide Antibiotic Synthetases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9480-1

The kinetics of enzyme-catalyzed reactions with two or more substrates or products☆I. Nomenclature and rate equations

21 January 2018

1 reference

12 December 2020

Gradual development of protein-like global structures through functional selection

1 reference

12 December 2020

Formal proof that the split genes of tRNAs of Nanoarchaeum equitans are an ancestral character

1 reference

12 December 2020

Getting past the RNA world: the initial Darwinian ancestor

1 reference

12 December 2020

On earlier states of the biochemical system

1 reference

12 December 2020

The first living systems: a bioenergetic perspective

1 reference

12 December 2020

Recurring main-chain anion-binding motifs in short polypeptides: nests.

1 reference

12 December 2020

Aminoacyl thioester chemistry of class II aminoacyl-tRNA synthetases

1 reference

12 December 2020

Exploring the interplay of stability and function in protein evolution: new methods further elucidate why protein stability is necessarily so tenuous and stability-increasing mutations compromise biological function

1 reference

12 December 2020

Functional association between three archaeal aminoacyl-tRNA synthetases

1 reference

12 December 2020

The relation between the divergence of sequence and structure in proteins

1 reference

12 December 2020

Macromolecular assemblage of aminoacyl-tRNA synthetases: quantitative analysis of protein-protein interactions and mechanism of complex assembly

1 reference

12 December 2020

Amino acid selectivity in the aminoacylation of coenzyme A and RNA minihelices by aminoacyl-tRNA synthetases

1 reference

12 December 2020

Global phylogeny determined by the combination of protein domains in proteomes

1 reference

12 December 2020

Ribosomal history reveals origins of modern protein synthesis

1 reference

12 December 2020

Aminoacylation of coenzyme A and pantetheine by aminoacyl-tRNA synthetases: possible link between noncoded and coded peptide synthesis

1 reference

12 December 2020

Concurrent chaperone and protease activities of ClpAP and the requirement for the N-terminal ClpA ATP binding site for chaperone activity

1 reference

12 December 2020

Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria

1 reference

12 December 2020

Exploring the functional robustness of an enzyme by in vitro evolution

1 reference

12 December 2020

Metabolic microspheres: origins and evolution

1 reference

12 December 2020

Mechanism of synthesis of adenosine(5')tetraphospho(5')adenosine (AppppA) by aminoacyl-tRNA synthetases

1 reference

12 December 2020

Membrane protein folding and oligomerization: the two-stage model

1 reference

12 December 2020

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

12 December 2020

Divergent evolution of a Rossmann fold and identification of its oldest surviving ancestor.

1 reference

12 December 2020

Attempts to Map a Process Evolution of Peptide Biosynthesis

1 reference

12 December 2020

Evolution of catalytic proteins or on the origin of enzyme species by means of natural selection

1 reference

12 December 2020

A tale of two synthetases

1 reference

12 December 2020

10.1007/S00239-011-9480-1

Identifiers

DOI

1 reference

12 January 2018

PubMed ID

22210458

1 reference

12 January 2018