(Q47820233)

5 February 2018

review article

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title

Protein design: a perspective from simple tractable models. (English)

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5 February 2018

main subject

protein design

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author

Eugene I. Shakhnovich

series ordinal

1

object named as

Shakhnovich EI

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5 February 2018

1 January 1998

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5 February 2018

published in

Folding & design

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5 February 2018

volume

3

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5 February 2018

page(s)

R45-58

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5 February 2018

issue

3

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5 February 2018

Funnels, pathways, and the energy landscape of protein folding: a synthesis

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Nucleation mechanisms in protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Theoretical studies of protein-folding thermodynamics and kinetics

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

De novo protein design: fully automated sequence selection

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Functional rapidly folding proteins from simplified amino acid sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Optimal protein-folding codes from spin-glass theory

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Engineering of stable and fast-folding sequences of model proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Criterion that determines the foldability of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Principles that govern the folding of protein chains

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Formation of unique structure in polypeptide chains. Theoretical investigation with the aid of a replica approach

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Phase diagram of random copolymers

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Statistical mechanics of proteins with "evolutionary selected" sequences

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Freezing transition of random heteropolymers consisting of an arbitrary set of monomers

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Proteins with selected sequences fold into unique native conformation

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Statistical mechanics of simple models of protein folding and design

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Spin glasses and the statistical mechanics of protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Protein folding bottlenecks: A lattice Monte Carlo simulation

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

How to derive a protein folding potential? A new approach to an old problem

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Why are the same protein folds used to perform different functions?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Implications of thermodynamics of protein folding for evolution of primary sequences

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

A test of lattice protein folding algorithms

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Impact of local and non-local interactions on thermodynamics and kinetics of protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Is heteropolymer freezing well described by the random energy model?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

The role of topological constraints in the kinetics of collapse of macromolecules

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

A new approach to the design of stable proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Thermodynamic procedure to synthesize heteropolymers that can renature to recognize a given target molecule

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Is burst hydrophobic collapse necessary for protein folding?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

A free energy analysis by unfolding applied to 125-mers on a cubic lattice

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Theoretical approaches to designing novel sequences to fit a given fold

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Mean-field minimization methods for biological macromolecules

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Why do protein architectures have Boltzmann-like statistics?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Emergence of Preferred Structures in a Simple Model of Protein Folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

New algorithm for protein design.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Design of proteins with selected thermal properties

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Optimal Protein Design Procedure

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Chain Length Scaling of Protein Folding Time

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Ribonucleotide reductase from Thermus X-1, a thermophilic organism

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Domains in folding of model proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Foldons, protein structural modules, and exons

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Improved design of stable and fast-folding model proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Evolution-like selection of fast-folding model proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

How evolution makes proteins fold quickly

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Conserved residues and the mechanism of protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

On constructing folding heteropolymers

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Thermodynamics of protein folding: a statistical mechanical study of a small all-beta protein

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Intermediate states in protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

The nucleation-collapse mechanism in protein folding: evidence for the non-uniqueness of the folding nucleus

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Protein design by binary patterning of polar and nonpolar amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Protein structure comparison by alignment of distance matrices

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Strain in the folding nucleus of chymotrypsin inhibitor 2

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Pathways for protein folding: is a new view needed?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Structure-derived potentials and protein simulations

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Potential energy functions for threading

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

The role of internal packing interactions in determining the structure and stability of a protein

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

The crystal structure of a mutant protein with altered but improved hydrophobic core packing

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Probing the role of packing specificity in protein design

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

Optimal sequence selection in proteins of known structure by simulated evolution

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900021-2

7 January 2021

10.1016/S1359-0278(98)00021-2

Identifiers

DOI

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5 February 2018

1 reference

1 reference

5 February 2018