(Q48247004)

9 February 2018

title

An RNA decay factor wears a new coat: UPF3B modulates translation termination (English)

1 reference

9 February 2018

Zhaofeng Gao

1

0 references

author name string

Miles Wilkinson

series ordinal

2

1 reference

9 February 2018

publication date

20 December 2017

1 reference

9 February 2018

published in

F1000Research

1 reference

9 February 2018

volume

6

1 reference

9 February 2018

page(s)

2159

1 reference

9 February 2018

Creative Commons Attribution 4.0 International

copyright license

start time

20 December 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Stress and the nonsense-mediated RNA decay pathway

22 May 2018

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ATP hydrolysis by UPF1 is required for efficient translation termination at premature stop codons

22 May 2018

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The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality

22 May 2018

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Hyperphosphorylation amplifies UPF1 activity to resolve stalls in nonsense-mediated mRNA decay

22 May 2018

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Coupling between the DEAD-box RNA helicases Ded1p and eIF4A

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Exon Junction Complexes Show a Distributional Bias toward Alternatively Spliced mRNAs and against mRNAs Coding for Ribosomal Proteins.

22 May 2018

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PABP enhances release factor recruitment and stop codon recognition during translation termination

22 May 2018

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Nonsense-Mediated RNA Decay Influences Human Embryonic Stem Cell Fate.

22 May 2018

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The Meaning of NMD: Translate or Perish

22 May 2018

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Nonsense-mediated mRNA decay: novel mechanistic insights and biological impact

22 May 2018

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The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay

22 May 2018

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Ribosome Footprint Profiling of Translation throughout the Genome

22 May 2018

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Recent transcriptome-wide mapping of UPF1 binding sites reveals evidence for its recruitment to mRNA before translation

22 May 2018

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Nonsense-Mediated mRNA Decay: Degradation of Defective Transcripts Is Only Part of the Story

22 May 2018

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Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes

22 May 2018

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Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities

22 May 2018

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Full UPF3B function is critical for neuronal differentiation of neural stem cells.

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

RNA degradation drives stem cell differentiation

22 May 2018

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The unfolded protein response is shaped by the NMD pathway

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Smg6/Est1 licenses embryonic stem cell differentiation via nonsense-mediated mRNA decay

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

NMD: At the crossroads between translation termination and ribosome recycling

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

A post-translational regulatory switch on UPF1 controls targeted mRNA degradation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Developmental and maintenance defects in Rett syndrome neurons identified by a new mouse staging system in vitro.

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Regulation of nonsense-mediated mRNA decay: implications for physiology and disease

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Timothy syndrome is associated with activity-dependent dendritic retraction in rodent and human neurons

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

NMD: a multifaceted response to premature translational termination

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Regulation of nonsense-mediated mRNA decay

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

The elongation, termination, and recycling phases of translation in eukaryotes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

The DEAD-box protein Dhh1 promotes decapping by slowing ribosome movement

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Translational competence of ribosomes released from a premature termination codon is modulated by NMD factors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

A novel frameshift mutation in UPF3B identified in brothers affected with childhood onset schizophrenia and autism spectrum disorders.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

The mechanism of eukaryotic translation initiation and principles of its regulation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Translation initiation on mammalian mRNAs with structured 5'UTRs requires DExH-box protein DHX29.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Distinct eRF3 requirements suggest alternate eRF1 conformations mediate peptide release during eukaryotic translation termination

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

An alternative branch of the nonsense-mediated decay pathway

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

The role of Upf proteins in modulating the translation read-through of nonsense-containing transcripts

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Mechanisms of mRNA surveillance in eukaryotes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3'-Poly(A) tail of mRNA. Direct association of erf3/GSPT with polyadenylate-binding protein

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

A Upf3b-mutant mouse model with behavioral and neurogenesis defects.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Codon optimality and mRNA decay.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

The UPF3B gene, implicated in intellectual disability, autism, ADHD and childhood onset schizophrenia regulates neural progenitor cell behaviour and neuronal outgrowth

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Broadening the phenotype associated with mutations in UPF3B: two further cases with renal dysplasia and variable developmental delay.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

Rett syndrome: 3-D confocal microscopy of cortical pyramidal dendrites and afferents.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749124

A nonconservative amino acid change in the UPF3B gene in a patient with schizophrenia

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.12688%2FF1000RESEARCH.12704.1

21 January 2018

The cycle of nonsense

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29333258

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolution of translation termination factor eRF3: Is GSPT2 generated by retrotransposition of GSPT1's mRNA?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29333258

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Assembly and analysis of eukaryotic translation initiation complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29333258

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.12688/F1000RESEARCH.12704.1

1 reference

9 February 2018

PMC publication ID

5749124

1 reference

9 February 2018

PubMed publication ID

29333258

1 reference

9 February 2018