(Q49423566)

English

Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains.

scientific article published on 8 January 2018

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scholarly article

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Europe PubMed Central

20 February 2018

http://europepmc.org/abstract/PMC/5759876

Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains. (English)

1 reference

Europe PubMed Central

20 February 2018

http://europepmc.org/abstract/PMC/5759876

Bifidobacterium longum

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Bifidobacterium longum

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Silvia Arboleya

1

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Europe PubMed Central

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2 June 2020

Francesca Bottacini

2

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2 June 2020

Mary O'Connell-Motherway

3

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2 June 2020

Reynolds Paul Ross

5

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2 June 2020

Catherine Stanton

7

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Catherine Stanton

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2 June 2020

author name string

C Anthony Ryan

4

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2 June 2020

Douwe van Sinderen

6

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2 June 2020

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8 January 2018

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Europe PubMed Central

20 February 2018

http://europepmc.org/abstract/PMC/5759876

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29310579%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

19

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2 June 2020

1

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2 June 2020

33

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2 June 2020

https://scigraph.springernature.com/pub.10.1186/s12864-017-4388-9

0 references

Feeding the microbiota-gut-brain axis: diet, microbiome, and neuropsychiatry

1 reference

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22 May 2018

Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596.

1 reference

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22 May 2018

Gut Bifidobacteria Populations in Human Health and Aging

1 reference

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22 May 2018

Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract

1 reference

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22 May 2018

Bifidobacteria and Their Role as Members of the Human Gut Microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

A key genetic factor for fucosyllactose utilization affects infant gut microbiota development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Bosom Buddies: The Symbiotic Relationship Between Infants and Bifidobacterium longum ssp. longum and ssp. infantis. Genetic and Probiotic Features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Intraspecies Genomic Diversity and Long-Term Persistence of Bifidobacterium longum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Subspeciation of Bifidobacterium longum by multilocus approaches and amplified fragment length polymorphism: Description of B. longum subsp. suillum subsp. nov., isolated from the faeces of piglets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Starch and starch hydrolysates are favorable carbon sources for bifidobacteria in the human gut

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Insights from 20 years of bacterial genome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Genomic encyclopedia of type strains of the genus Bifidobacterium

1 reference

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22 May 2018

Comparative genomics of the Bifidobacterium breve taxon

1 reference

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22 May 2018

The ability of bifidobacteria to degrade arabinoxylan oligosaccharide constituents and derived oligosaccharides is strain dependent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Variation in consumption of human milk oligosaccharides by infant gut-associated strains of Bifidobacterium breve.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Draft Genome Sequences of Two Pairs of Human Intestinal Bifidobacterium longum subsp. longum Strains, 44B and 1-6B and 35B and 2-2B, Consecutively Isolated from Two Children after a 5-Year Time Period

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Human gut microbiome viewed across age and geography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Diversity of bifidobacteria within the infant gut microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

The impact of the gut microbiota on human health: an integrative view

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Bifidobacterium longum subsp. infantis ATCC 15697 -Fucosidases Are Active on Fucosylated Human Milk Oligosaccharides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

PGAP: pan-genomes analysis pipeline

1 reference

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22 May 2018

Carbohydrate metabolism in Bifidobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Unique sugar metabolic pathways of bifidobacteria

1 reference

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22 May 2018

Comparative genomics of the genus Bifidobacterium

1 reference

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22 May 2018

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides

1 reference

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22 May 2018

Crystallographic and mutational analyses of substrate recognition of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum

1 reference

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22 May 2018

Microbiomic analysis of the bifidobacterial population in the human distal gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Exploring the diversity of the bifidobacterial population in the human intestinal tract

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Proposal to reclassify the three biotypes of Bifidobacterium longum as three subspecies: Bifidobacterium longum subsp. longum subsp. nov., Bifidobacterium longum subsp. infantis comb. nov. and Bifidobacterium longum subsp. suis comb. nov.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Structural basis of the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase from Bifidobacterium bifidum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Rapid screening method for analyzing the conjugated linoleic acid production capabilities of bacterial cultures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

The gut flora as a forgotten organ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Bifidobacterium longum endogalactanase liberates galactotriose from type I galactans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Identification and molecular cloning of a novel glycoside hydrolase family of core 1 type O-glycan-specific endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Getting better with bifidobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

1 reference

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22 May 2018

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

The ENZYME database in 2000

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

22 May 2018

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1 reference

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14 August 2018

The neonatal gut harbours distinct bifidobacterial strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

14 August 2018

Fermentation of xylo-oligosaccharides by Bifidobacterium adolescentis DSMZ 18350: kinetics, metabolism, and β-xylosidase activities

1 reference

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14 August 2018

Application of several molecular techniques to study numerically predominant Bifidobacterium spp. and Bacteroidales order strains in the feces of healthy children.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5759876

14 August 2018

Identifiers

10.1186/S12864-017-4388-9

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29310579%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-017-4388-9

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24 November 2022

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2 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29310579%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

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