(Q50066036)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

title

Nanopore sequencing and assembly of a human genome with ultra-long reads (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Aaron R Quinlan

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Matthew Loose

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Miten Jain

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Thomas A Sasani

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Andrew Beggs

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Alexander Dilthey

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Arang Rhie

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Adam Phillippy

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

3

Karen H Miga

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

2

Sergey Koren

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

author name string

Josh Quick

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Arthur C Rand

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

John R Tyson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Ian T Fiddes

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Sunir Malla

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Hannah Marriott

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Tom Nieto

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Hugh E Olsen

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Brent S Pedersen

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Hollian Richardson

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Terrance P Snutch

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Louise Tee

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Jared T Simpson

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Nicholas J Loman

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Benedict Paten

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

language of work or name

English

0 references

publication date

29 January 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

volume

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

page(s)

338-345

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

16 March 2020

copyright license

start time

29 January 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/nbt.4060

0 references

cites work

Rapid de novo assembly of the European eel genome from nanopore sequencing reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Detecting DNA cytosine methylation using nanopore sequencing.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Long-read sequencing and de novo assembly of a Chinese genome

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Assemblytics: a web analytics tool for the detection of variants from an assembly.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Extensive sequencing of seven human genomes to characterize benchmark reference materials

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Long-read sequence assembly of the gorilla genome

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Real-time, portable genome sequencing for Ebola surveillance

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Genetic variation and the de novo assembly of human genomes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

A global reference for human genetic variation

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

SpeedSeq: ultra-fast personal genome analysis and interpretation

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Assembly and diploid architecture of an individual human genome via single-molecule technologies

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

A complete bacterial genome assembled de novo using only nanopore sequencing data

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Improved genome inference in the MHC using a population reference graph

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Improved data analysis for the MinION nanopore sequencer

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Nanopores discriminate among five C5-cytosine variants in DNA

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

LUMPY: a probabilistic framework for structural variant discovery.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Optimal assembly for high throughput shotgun sequencing

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

An integrated semiconductor device enabling non-optical genome sequencing

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Integrative genomics viewer

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

BEDTools: a flexible suite of utilities for comparing genomic features

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Single-molecule sequencing of an individual human genome

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Analysis of the largest tandemly repeated DNA families in the human genome

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Accurate whole human genome sequencing using reversible terminator chemistry

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

The complete genome of an individual by massively parallel DNA sequencing

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Closing gaps in the human genome with fosmid resources generated from multiple individuals

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Comparative genomics search for losses of long-established genes on the human lineage

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

An assessment of the sequence gaps: unfinished business in a finished human genome

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Long-range organization of tandem arrays of alpha satellite DNA at the centromeres of human chromosomes: high-frequency array-length polymorphism and meiotic stability.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Nanopore sequencing detects structural variants in cancer.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Mapping DNA methylation with high-throughput nanopore sequencing

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

De novo assembly and phasing of a Korean human genome.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Cactus graphs for genome comparisons

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Accurate detection of complex structural variations using single-molecule sequencing

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5889714

Sequences of 95 human MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II.

2 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.4060

inferred from DOI database lookup

7 January 2021

based on heuristic

Measurement of telomere length by the Southern blot analysis of terminal restriction fragment lengths

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.4060

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT.4060

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29431738%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

PubMed publication ID

29431738

1 reference