(Q50071109)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

title

Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes (English)

1 reference

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9 April 2020

2

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9 April 2020

Morten Nielsen

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

author name string

Bruno Alvarez

series ordinal

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

Massimo Andreatta

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

publication date

26 February 2018

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9 April 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

volume

18

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9 April 2020

issue

12

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

page(s)

e1700252

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Ligand motifs of HLA-DRB5*0101 and DRB1*1501 molecules delineated from self-peptides

9 April 2020

cites work

1 reference

12 December 2020

MHC ligands and peptide motifs: first listing

1 reference

12 December 2020

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

1 reference

12 December 2020

Mhc-guided processing: binding of large antigen fragments

1 reference

12 December 2020

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

1 reference

12 December 2020

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

1 reference

12 December 2020

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

12 December 2020

Accurate and sensitive peptide identification with Mascot Percolator

1 reference

12 December 2020

MHC class II epitope predictive algorithms.

1 reference

12 December 2020

NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data

1 reference

12 December 2020

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

1 reference

12 December 2020

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

1 reference

12 December 2020

Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach

1 reference

12 December 2020

Cleaning up the masses: exclusion lists to reduce contamination with HPLC-MS/MS

1 reference

12 December 2020

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data

1 reference

12 December 2020

MHC-NP: predicting peptides naturally processed by the MHC.

1 reference

12 December 2020

Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy

1 reference

12 December 2020

Toward Understanding the Essence of Post-Translational Modifications for the Mycobacterium tuberculosis Immunoproteome

1 reference

12 December 2020

Direct interrogation of viral peptides presented by the class I HLA of HIV-infected T cells

1 reference

12 December 2020

The immune epitope database (IEDB) 3.0.

1 reference

12 December 2020

Uncovering the peptide-binding specificities of HLA-C: a general strategy to determine the specificity of any MHC class I molecule

1 reference

12 December 2020

Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

1 reference

12 December 2020

Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification

1 reference

12 December 2020

Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells

1 reference

12 December 2020

High-resolution analysis of the murine MHC class II immunopeptidome

1 reference

12 December 2020

Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry

1 reference

12 December 2020

Sampling From the Proteome to the Human Leukocyte Antigen-DR (HLA-DR) Ligandome Proceeds Via High Specificity

1 reference

12 December 2020

Use of HLA peptidomics and whole exome sequencing to identify human immunogenic neo-antigens.

1 reference

12 December 2020

Pathogenic CD4 T cells in type 1 diabetes recognize epitopes formed by peptide fusion

1 reference

12 December 2020

High-sensitivity HLA class I peptidome analysis enables a precise definition of peptide motifs and the identification of peptides from cell lines and patients' sera.

1 reference

12 December 2020

NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets

1 reference

12 December 2020

Mass spectrometry-based antigen discovery for cancer immunotherapy.

1 reference

12 December 2020

Unsupervised HLA Peptidome Deconvolution Improves Ligand Prediction Accuracy and Predicts Cooperative Effects in Peptide-HLA Interactions

1 reference

12 December 2020

A large fraction of HLA class I ligands are proteasome-generated spliced peptides.

1 reference

12 December 2020

Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

1 reference

12 December 2020

The MHC Class II Immunopeptidome of Lymph Nodes in Health and in Chemically Induced Colitis

1 reference

12 December 2020

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

1 reference

12 December 2020

MHC-I Ligand Discovery Using Targeted Database Searches of Mass Spectrometry Data: Implications for T-Cell Immunotherapies.

1 reference

12 December 2020

GibbsCluster: unsupervised clustering and alignment of peptide sequences.

1 reference

12 December 2020

Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells

1 reference

12 December 2020

Sarcoma Eradication by Doxorubicin and Targeted TNF Relies upon CD8+ T-cell Recognition of a Retroviral Antigen

1 reference

12 December 2020

Machine learning reveals a non-canonical mode of peptide binding to MHC class II molecules.

1 reference

12 December 2020

Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.

1 reference

12 December 2020

Human Leukocyte Antigen (HLA)-DRB1*15:01 and HLA-DRB5*01:01 Present Complementary Peptide Repertoires

1 reference

12 December 2020

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

1 reference

12 December 2020

Identifiers

DOI

10.1002/PMIC.201700252

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29327813%20AND%20SRC:MED&resulttype=core&format=json

9 April 2020

PubMed publication ID

29327813

1 reference